RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 CDRT15L2A8MXV6 281 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 FAM25EA8MYX2 175 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 C19orf81C9J6K1 198 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 PDLIM1O00151 329 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 CTDSP2O14595 271 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 SSX4O60224 188 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 TSPAN1O60635 241 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 PRAMEF11O60813 436 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 SUPT3HO75486 399 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 RPS6KA5O75582 802 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 STAM2O75886 525 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 GFPT2O94808 682 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 OR2C1O95371 312 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 IGLV1-44P01699 117 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 PATE4P0C8F1 98 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 MMP9P14780 707 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 LIFP15018 202 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 DESP17661 470 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 EIF2S2P20042 333 aaKnown RBP1.98□□□□□ -2.09
HMGB1-208ENST00000490788 CCNCP24863 283 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 CDC25CP30307 473 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 GCH1P30793 250 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 HOXC13P31276 330 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 HADHAP40939 763 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 SLC15A1P46059 708 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 PSMD7P51665 324 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 PDX1P52945 283 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 UBASH3AP57075 661 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 SLC8A3P57103 927 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 GEMIN4P57678 1058 aaKnown RBP1.98□□□□□ -2.09
HMGB1-208ENST00000490788 SNX16P57768 344 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 ARPC4P59998 168 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 SNRPD1P62314 119 aaKnown RBP1.98□□□□□ -2.09
HMGB1-208ENST00000490788 MC1RQ01726 317 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 NUCB1Q02818 461 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 ACTN3Q08043 901 aaPredicted RBP1.98□□□□□ -2.09
HMGB1-208ENST00000490788 PPIDQ08752 370 aaKnown RBP1.98□□□□□ -2.09
HMGB1-208ENST00000490788 COX10Q12887 443 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 CHAF1BQ13112 559 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 CBX3Q13185 183 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 CUL3Q13618 768 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 ITGA9Q13797 1035 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 VGLL4Q14135 290 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 SIM2Q14190 667 aaPredicted RBP1.98□□□□□ -2.09
HMGB1-208ENST00000490788 TAF7Q15545 349 aaPredicted RBP1.98□□□□□ -2.09
HMGB1-208ENST00000490788 DLG2Q15700 870 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 IMMTQ16891 758 aaKnown RBP1.98□□□□□ -2.09
HMGB1-208ENST00000490788 KLHL40Q2TBA0 621 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 KIAA1644Q3SXP7 199 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 RAB6CQ53S08 254 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 SPECC1Q5M775 1068 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 SPDYCQ5MJ68 293 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 HYIQ5T013 277 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 WLSQ5T9L3 541 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 ITPRIPL1Q6GPH6 555 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 THOC7Q6I9Y2 204 aaKnown RBP1.98□□□□□ -2.09
HMGB1-208ENST00000490788 CORO6Q6QEF8 472 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 CCDC121Q6ZUS5 278 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 NCCRP1Q6ZVX7 275 aaPredicted RBP1.98□□□□□ -2.09
HMGB1-208ENST00000490788 STXBP4Q6ZWJ1 553 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 CENPQQ7L2Z9 268 aaPredicted RBP1.98□□□□□ -2.09
HMGB1-208ENST00000490788 KRT77Q7Z794 578 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 TBC1D1Q86TI0 1168 aaPredicted RBP1.98□□□□□ -2.09
HMGB1-208ENST00000490788 CRYBG2Q8N1P7 616 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 SMYD1Q8NB12 490 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 DDHD1Q8NEL9 900 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 APPL2Q8NEU8 664 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 OR8K1Q8NGG5 319 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 SUN5Q8TC36 379 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 KIAA1524Q8TCG1 905 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 FCAMRQ8WWV6 532 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 SUSD6Q92537 303 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 SNX21Q969T3 373 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 WBP1Q96G27 269 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 CALML4Q96GE6 196 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 EPSTI1Q96J88 318 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 CABS1Q96KC9 395 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 ZMAT2Q96NC0 199 aaKnown RBP1.98□□□□□ -2.09
HMGB1-208ENST00000490788 ZNF582Q96NG8 517 aaPredicted RBP1.98□□□□□ -2.09
HMGB1-208ENST00000490788 MYADMQ96S97 322 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 NAP1L3Q99457 506 aaPredicted RBP1.98□□□□□ -2.09
HMGB1-208ENST00000490788 SRSF8Q9BRL6 282 aaKnown RBP1.98□□□□□ -2.09
HMGB1-208ENST00000490788 FNDC11Q9BVV2 318 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 UBXN6Q9BZV1 441 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 RAB6CQ9H0N0 254 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 PAG1Q9NWQ8 432 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 QPCTLQ9NXS2 382 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 FBXL5Q9UKA1 691 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 GMEB2Q9UKD1 530 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 MTUS1Q9ULD2 1270 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 MRPS28Q9Y2Q9 187 aaKnown RBP1.98□□□□□ -2.09
HMGB1-208ENST00000490788 GRIP1Q9Y3R0 1128 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 TTLL3Q9Y4R7 772 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 PRRC2BQ5JSZ5 2229 aaKnown RBP1.98□□□□□ -2.09
HMGB1-208ENST00000490788 PIEZO2Q9H5I5 2752 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 RTL1A6NKG5 1358 aa1.98□□□□□ -2.09
HMGB1-208ENST00000490788 ROCK2O75116 1388 aaKnown RBP1.98□□□□□ -2.09
HMGB1-208ENST00000490788 LRRC37AA6NMS7 1700 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 LOC100509620A0A075B734 347 aa1.97□□□□□ -2.09
HMGB1-208ENST00000490788 GIMAP1-GIMAP5A0A087WTJ2 511 aa1.97□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms