RNA–Protein interactions for RNA: ENST00000486404.5

CHMP3-208, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 650 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-208ENST00000486404 PELI2Q9HAT8 420 aa12.23□□□□□ -0.45
CHMP3-208ENST00000486404 ZNF160Q9HCG1 818 aa12.23□□□□□ -0.45
CHMP3-208ENST00000486404 PRM3Q9NNZ6 103 aa12.23□□□□□ -0.45
CHMP3-208ENST00000486404 WWOXQ9NZC7 414 aa12.23□□□□□ -0.45
CHMP3-208ENST00000486404 LUZP4Q9P127 313 aa12.23□□□□□ -0.45
CHMP3-208ENST00000486404 MTRF1LQ9UGC7 380 aaKnown RBP12.23□□□□□ -0.45
CHMP3-208ENST00000486404 MRPS2Q9Y399 296 aaKnown RBP12.23□□□□□ -0.45
CHMP3-208ENST00000486404 KCNE2Q9Y6J6 123 aa12.23□□□□□ -0.45
CHMP3-208ENST00000486404 NBASA2RRP1 2371 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 KIF2AO00139 706 aaPredicted RBP12.22□□□□□ -0.45
CHMP3-208ENST00000486404 PCDH17O14917 1159 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 FOXS1O43638 330 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 RDH16O75452 317 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 HPP00738 406 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 CCDC166P0CW27 439 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 PHBP35232 272 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 XCR1P46094 333 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 GPX6P59796 221 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 RAB10P61026 200 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 ATP6V0D1P61421 351 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 REEP5Q00765 189 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 HERC3Q15034 1050 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 IGFBP7Q16270 282 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 SYT16Q17RD7 645 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 CATSPEREQ5SY80 951 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 GRTP1Q5TC63 336 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 AGAP7PQ5VUJ5 663 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 SLC6A19Q695T7 634 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 TMEM214Q6NUQ4 689 aaKnown RBP12.22□□□□□ -0.45
CHMP3-208ENST00000486404 JMJD6Q6NYC1 403 aaPredicted RBP12.22□□□□□ -0.45
CHMP3-208ENST00000486404 ABHD13Q7L211 337 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 PARP9Q8IXQ6 854 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 TCAIMQ8N3R3 496 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 ZADH2Q8N4Q0 377 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 ARHGEF39Q8N4T4 335 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 CPT1CQ8TCG5 803 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 FBF1Q8TES7 1133 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 METTL21AQ8WXB1 218 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 TRIM44Q96DX7 344 aaPredicted RBP12.22□□□□□ -0.45
CHMP3-208ENST00000486404 THOC3Q96J01 351 aaKnown RBP12.22□□□□□ -0.45
CHMP3-208ENST00000486404 AGAP4Q96P64 663 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 OR4K3Q96R72 315 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 MCMBPQ9BTE3 642 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 LRRC1Q9BTT6 524 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 TGIF2Q9GZN2 237 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 LHPPQ9H008 270 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 EPS8L2Q9H6S3 715 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 CNOT10Q9H9A5 744 aaKnown RBP12.22□□□□□ -0.45
CHMP3-208ENST00000486404 RIC8BQ9NVN3 520 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 MKL2Q9ULH7 1088 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 PLAAQ9Y263 795 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 CPAMD8Q8IZJ3 1885 aa12.22□□□□□ -0.45
CHMP3-208ENST00000486404 SCN2AQ99250 2005 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 CTAGE15A4D2H0 777 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 ZNF860A6NHJ4 632 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 SGK494L7N484 410 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 SORBS2O94875 1100 aaKnown RBP12.21□□□□□ -0.45
CHMP3-208ENST00000486404 KLHL18O94889 574 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 CTAGE8P0CG41 777 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 C8orf89P0DMQ9 161 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 PWP1Q13610 501 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 EFTUD2Q15029 972 aaKnown RBP eCLIP12.21□□□□□ -0.45
CHMP3-208ENST00000486404 RBBP5Q15291 538 aaKnown RBP12.21□□□□□ -0.45
CHMP3-208ENST00000486404 TGFBIQ15582 683 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 TRADDQ15628 312 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 UAP1Q16222 522 aaPredicted RBP12.21□□□□□ -0.45
CHMP3-208ENST00000486404 NIPAL1Q6NVV3 410 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 CYS1Q717R9 158 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 PRSS41Q7RTY9 318 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 TBC1D1Q86TI0 1168 aaPredicted RBP12.21□□□□□ -0.45
CHMP3-208ENST00000486404 CTAGE6Q86UF2 777 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 GPSM1Q86YR5 675 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 CTAGE4Q8IX94 777 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 KBTBD2Q8IY47 623 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 SPATA6LQ8N4H0 392 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 SNX31Q8N9S9 440 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 KCT2Q8NC54 265 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 RBCK1Q9BYM8 510 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 SLC29A3Q9BZD2 475 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 LRRC4CQ9HCJ2 640 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 CD274Q9NZQ7 290 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 C19orf25Q9UFG5 118 aaPredicted RBP12.21□□□□□ -0.45
CHMP3-208ENST00000486404 RNF112Q9ULX5 631 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 SLC22A14Q9Y267 594 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 B3GNT3Q9Y2A9 372 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 NAALAD2Q9Y3Q0 740 aa12.21□□□□□ -0.45
CHMP3-208ENST00000486404 URADA6NGE7 173 aa12.2□□□□□ -0.46
CHMP3-208ENST00000486404 LCMT2O60294 686 aaKnown RBP12.2□□□□□ -0.46
CHMP3-208ENST00000486404 VPS4BO75351 444 aa12.2□□□□□ -0.46
CHMP3-208ENST00000486404 TUBB4AP04350 444 aa12.2□□□□□ -0.46
CHMP3-208ENST00000486404 COX6A1P12074 109 aa12.2□□□□□ -0.46
CHMP3-208ENST00000486404 CD1DP15813 335 aa12.2□□□□□ -0.46
CHMP3-208ENST00000486404 GNAZP19086 355 aa12.2□□□□□ -0.46
CHMP3-208ENST00000486404 AHRP35869 848 aa12.2□□□□□ -0.46
CHMP3-208ENST00000486404 SCTRP47872 440 aa12.2□□□□□ -0.46
CHMP3-208ENST00000486404 SOX8P57073 446 aa12.2□□□□□ -0.46
CHMP3-208ENST00000486404 AP2B1P63010 937 aa12.2□□□□□ -0.46
CHMP3-208ENST00000486404 CDC16Q13042 620 aa12.2□□□□□ -0.46
CHMP3-208ENST00000486404 ZKSCAN8Q15776 578 aaPredicted RBP12.2□□□□□ -0.46
CHMP3-208ENST00000486404 ZXDCQ2QGD7 858 aaPredicted RBP12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms