RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 ZFP69BQ9UJL9 534 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 HAO1Q9UJM8 370 aa11.7□□□□□ -0.54
SDC1-206ENST00000482879 CCDC187A0A096LP49 1063 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 ULK1O75385 1050 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 CHEK2O96017 543 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 PDYNP01213 254 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 VIMP08670 466 aaKnown RBP11.69□□□□□ -0.54
SDC1-206ENST00000482879 KITP10721 976 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 CCL4P13236 92 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 GSTM2P28161 218 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 SERPINB1P30740 379 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 PIK3CBP42338 1070 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 HTR6P50406 440 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 PHEXP78562 749 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 TARDBPQ13148 414 aaKnown RBP eCLIP11.69□□□□□ -0.54
SDC1-206ENST00000482879 TUBB3Q13509 450 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 PUM1Q14671 1186 aaKnown RBP eCLIP11.69□□□□□ -0.54
SDC1-206ENST00000482879 WASHC2DQ5SRD0 308 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 C10orf62Q5T681 223 aaPredicted RBP11.69□□□□□ -0.54
SDC1-206ENST00000482879 SCIMPQ6UWF3 145 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 RAB11FIP2Q7L804 512 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 VN1R5Q7Z5H4 357 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 VN1R4Q7Z5H5 301 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 ASPGQ86U10 573 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 HOMEZQ8IX15 550 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 GALNT15Q8N3T1 639 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 RNF175Q8N4F7 328 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 CHCHD4Q8N4Q1 142 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 CSNK1A1LQ8N752 337 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 CAMKVQ8NCB2 501 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 TRPV3Q8NET8 790 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 WDR20Q8TBZ3 569 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 CREB3L4Q8TEY5 395 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 ZNF473Q8WTR7 871 aaKnown RBP11.69□□□□□ -0.54
SDC1-206ENST00000482879 SLC13A3Q8WWT9 602 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 LIN37Q96GY3 246 aaPredicted RBP11.69□□□□□ -0.54
SDC1-206ENST00000482879 SEC16BQ96JE7 1060 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 FAR2Q96K12 515 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 OR6C1Q96RD1 312 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 MTERF1Q99551 399 aaKnown RBP11.69□□□□□ -0.54
SDC1-206ENST00000482879 MACROD1Q9BQ69 325 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 SPRTNQ9H040 489 aaPredicted RBP11.69□□□□□ -0.54
SDC1-206ENST00000482879 FARSBQ9NSD9 589 aaKnown RBP11.69□□□□□ -0.54
SDC1-206ENST00000482879 SIDT1Q9NXL6 827 aaKnown RBP11.69□□□□□ -0.54
SDC1-206ENST00000482879 MARCOQ9UEW3 520 aaPredicted RBP11.69□□□□□ -0.54
SDC1-206ENST00000482879 SERTAD3Q9UJW9 196 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 TSC22D4Q9Y3Q8 395 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 LOXL2Q9Y4K0 774 aa11.69□□□□□ -0.54
SDC1-206ENST00000482879 FAM149AA5PLN7 773 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 MAGEB17A8MXT2 336 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 FOXE1O00358 373 aaPredicted RBP11.68□□□□□ -0.54
SDC1-206ENST00000482879 TXNDC9O14530 226 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 NDUFS4O43181 175 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 EDF1O60869 148 aaKnown RBP11.68□□□□□ -0.54
SDC1-206ENST00000482879 SH3BGRLO75368 114 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 CLEC3AO75596 197 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 OR2B3O76000 313 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 TGFB1P01137 390 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 CTSBP07858 339 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 MSL3P1P0C860 447 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 ITGA1P56199 1179 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 RPS13P62277 151 aaKnown RBP11.68□□□□□ -0.54
SDC1-206ENST00000482879 GNGT1P63211 74 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 MC2RQ01718 297 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 RGS1Q08116 209 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 PWP1Q13610 501 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 ABRAXAS2Q15018 415 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 UGT3A2Q3SY77 523 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 TCTE1Q5JU00 501 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 MARCH9Q86YJ5 346 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 ZNF655Q8N720 491 aaPredicted RBP11.68□□□□□ -0.54
SDC1-206ENST00000482879 OR1L3Q8NH93 324 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 TWIST2Q8WVJ9 160 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 USP7Q93009 1102 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 ZNF501Q96CX3 271 aaPredicted RBP11.68□□□□□ -0.54
SDC1-206ENST00000482879 TM4SF19Q96DZ7 209 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 ZNF285Q96NJ3 590 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 NLNQ9BYT8 704 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 DMRT3Q9NQL9 472 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 STARD5Q9NSY2 213 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 SLC39A1Q9NY26 324 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 RARRES3Q9UL19 164 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 DNAJC15Q9Y5T4 150 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 SCN2AQ99250 2005 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 CFAP54Q96N23 3096 aa11.68□□□□□ -0.54
SDC1-206ENST00000482879 B4E171 279 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 SLCO1B7G3V0H7 640 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 POLR1CO15160 346 aaPredicted RBP11.67□□□□□ -0.54
SDC1-206ENST00000482879 P2RX6O15547 441 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 HYAL3O43820 417 aaPredicted RBP11.67□□□□□ -0.54
SDC1-206ENST00000482879 SKAP2O75563 359 aaPredicted RBP11.67□□□□□ -0.54
SDC1-206ENST00000482879 SERPINA6P08185 405 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 SLC35G6P0C7Q6 338 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 LINC00032P0C843 101 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 JMJD7P0C870 316 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 PTX3P26022 381 aaPredicted RBP11.67□□□□□ -0.54
SDC1-206ENST00000482879 TSPAN7P41732 249 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 MAPK10P53779 464 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 ZNF33BQ06732 778 aa11.67□□□□□ -0.54
SDC1-206ENST00000482879 EIF3IQ13347 325 aaKnown RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms