RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 IFI44Q8TCB0 444 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 CREB3L4Q8TEY5 395 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 ERP27Q96DN0 273 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 APIPQ96GX9 242 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 CNDP2Q96KP4 475 aaKnown RBP16.82■□□□□ 0.28
UPF3A-206ENST00000480362 FCRL4Q96PJ5 515 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 CD180Q99467 661 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 SERPINI1Q99574 410 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 C1orf50Q9BV19 199 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 ZMYND15Q9H091 742 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 OR51B5Q9H339 312 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 SYNPO2LQ9H987 977 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 PARD6AQ9NPB6 346 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 KLHL3Q9UH77 587 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 PPT2Q9UMR5 302 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 USP34Q70CQ2 3546 aa16.82■□□□□ 0.28
UPF3A-206ENST00000480362 CASC3O15234 703 aaKnown RBP16.81■□□□□ 0.28
UPF3A-206ENST00000480362 LRP3O75074 770 aa16.81■□□□□ 0.28
UPF3A-206ENST00000480362 TBX6O95947 436 aaPredicted RBP16.81■□□□□ 0.28
UPF3A-206ENST00000480362 C9P02748 559 aa16.81■□□□□ 0.28
UPF3A-206ENST00000480362 CD59P13987 128 aa16.81■□□□□ 0.28
UPF3A-206ENST00000480362 CKMT2P17540 419 aa16.81■□□□□ 0.28
UPF3A-206ENST00000480362 GSTM2P28161 218 aa16.81■□□□□ 0.28
UPF3A-206ENST00000480362 SQSTM1Q13501 440 aa16.81■□□□□ 0.28
UPF3A-206ENST00000480362 KIAA0040Q15053 153 aa16.81■□□□□ 0.28
UPF3A-206ENST00000480362 IL23RQ5VWK5 629 aa16.81■□□□□ 0.28
UPF3A-206ENST00000480362 WDR74Q6RFH5 385 aaPredicted RBP16.81■□□□□ 0.28
UPF3A-206ENST00000480362 CLNKQ7Z7G1 428 aa16.81■□□□□ 0.28
UPF3A-206ENST00000480362 CPSF7Q8N684 471 aaKnown RBP16.81■□□□□ 0.28
UPF3A-206ENST00000480362 C19orf47Q8N9M1 422 aaKnown RBP16.81■□□□□ 0.28
UPF3A-206ENST00000480362 TRPV3Q8NET8 790 aa16.81■□□□□ 0.28
UPF3A-206ENST00000480362 THAP11Q96EK4 314 aa16.81■□□□□ 0.28
UPF3A-206ENST00000480362 MS4A8Q9BY19 250 aa16.81■□□□□ 0.28
UPF3A-206ENST00000480362 KCNH6Q9H252 994 aa16.81■□□□□ 0.28
UPF3A-206ENST00000480362 LRRN3Q9H3W5 708 aa16.81■□□□□ 0.28
UPF3A-206ENST00000480362 ZNF385DQ9H6B1 395 aa16.81■□□□□ 0.28
UPF3A-206ENST00000480362 TMEM9Q9P0T7 183 aa16.81■□□□□ 0.28
UPF3A-206ENST00000480362 ARMCX1Q9P291 453 aa16.81■□□□□ 0.28
UPF3A-206ENST00000480362 COPG1Q9Y678 874 aaKnown RBP16.81■□□□□ 0.28
UPF3A-206ENST00000480362 SAP18O00422 153 aaKnown RBP16.8■□□□□ 0.28
UPF3A-206ENST00000480362 STATHP02808 62 aa16.8■□□□□ 0.28
UPF3A-206ENST00000480362 RPLP0P05388 317 aaKnown RBP16.8■□□□□ 0.28
UPF3A-206ENST00000480362 CSF2RBP32927 897 aa16.8■□□□□ 0.28
UPF3A-206ENST00000480362 DIO3P55073 304 aa16.8■□□□□ 0.28
UPF3A-206ENST00000480362 TBL3Q12788 808 aaKnown RBP16.8■□□□□ 0.28
UPF3A-206ENST00000480362 MAD2L1Q13257 205 aaPredicted RBP16.8■□□□□ 0.28
UPF3A-206ENST00000480362 CUL3Q13618 768 aa16.8■□□□□ 0.28
UPF3A-206ENST00000480362 DEPDC1Q5TB30 811 aa16.8■□□□□ 0.28
UPF3A-206ENST00000480362 CACHD1Q5VU97 1274 aa16.8■□□□□ 0.28
UPF3A-206ENST00000480362 KHDRBS2Q5VWX1 349 aaKnown RBP16.8■□□□□ 0.28
UPF3A-206ENST00000480362 RNF44Q7L0R7 432 aa16.8■□□□□ 0.28
UPF3A-206ENST00000480362 VN1R4Q7Z5H5 301 aa16.8■□□□□ 0.28
UPF3A-206ENST00000480362 CHTF18Q8WVB6 975 aa16.8■□□□□ 0.28
UPF3A-206ENST00000480362 SLC13A3Q8WWT9 602 aa16.8■□□□□ 0.28
UPF3A-206ENST00000480362 OR2A5Q96R48 311 aa16.8■□□□□ 0.28
UPF3A-206ENST00000480362 F2RL3Q96RI0 385 aa16.8■□□□□ 0.28
UPF3A-206ENST00000480362 ZFYVE21Q9BQ24 234 aa16.8■□□□□ 0.28
UPF3A-206ENST00000480362 MACROD1Q9BQ69 325 aa16.8■□□□□ 0.28
UPF3A-206ENST00000480362 CCDC106Q9BWC9 280 aa16.8■□□□□ 0.28
UPF3A-206ENST00000480362 MRPL1Q9BYD6 325 aaKnown RBP16.8■□□□□ 0.28
UPF3A-206ENST00000480362 FAM60AQ9NP50 221 aa16.8■□□□□ 0.28
UPF3A-206ENST00000480362 NOP53Q9NZM5 478 aaKnown RBP16.8■□□□□ 0.28
UPF3A-206ENST00000480362 ATXN7L1Q9ULK2 861 aaPredicted RBP16.8■□□□□ 0.28
UPF3A-206ENST00000480362 EIF3LQ9Y262 564 aaKnown RBP16.8■□□□□ 0.28
UPF3A-206ENST00000480362 MN1Q10571 1320 aaPredicted RBP16.79■□□□□ 0.28
UPF3A-206ENST00000480362 LOC105369274A0A096LPK9 316 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 IGHV5-51A0A0C4DH38 117 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 LOC102723532A0A0G2JNH3 316 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 A0A1W2PQM1 296 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 NDUFS4O43181 175 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 SH3BP5O60239 455 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 RASSF9O75901 435 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 IDO1P14902 403 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 TGM1P22735 817 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 ATP4BP51164 291 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 ACSM2AQ08AH3 577 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 KLF10Q13118 480 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 SQLEQ14534 574 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 RPS6KA2Q15349 733 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 GSTA3Q16772 222 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 AASDHQ4L235 1098 aaPredicted RBP16.79■□□□□ 0.28
UPF3A-206ENST00000480362 SNAP47Q5SQN1 464 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 ACSM2BQ68CK6 577 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 FRMPD2BQ6IN97 320 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 TMEM71Q6P5X7 295 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 ASPGQ86U10 573 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 OR4N4Q8N0Y3 316 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 CARFQ8N187 725 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 C1orf52Q8N6N3 182 aaKnown RBP16.79■□□□□ 0.28
UPF3A-206ENST00000480362 TM4SF19Q96DZ7 209 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 TCTN2Q96GX1 697 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 METTL2AQ96IZ6 378 aaKnown RBP16.79■□□□□ 0.28
UPF3A-206ENST00000480362 NUDT22Q9BRQ3 303 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 AIG1Q9NVV5 245 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 FTSJ1Q9UET6 329 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 RUVBL1Q9Y265 456 aaKnown RBP16.79■□□□□ 0.28
UPF3A-206ENST00000480362 TMED5Q9Y3A6 229 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 POLR3HQ9Y535 204 aaPredicted RBP16.79■□□□□ 0.28
UPF3A-206ENST00000480362 GPR45Q9Y5Y3 372 aa16.79■□□□□ 0.28
UPF3A-206ENST00000480362 LRIT2A6NDA9 550 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms