RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 AGAP6Q5VW22 663 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 BEND5Q7L4P6 421 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 NLGN4XQ8N0W4 816 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 RHEBL1Q8TAI7 183 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 ZNF431Q8TF32 576 aaPredicted RBP13.09□□□□□ -0.31
USP42-206ENST00000479544 KLHL6Q8WZ60 621 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 CCDC120Q96HB5 630 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 AGAP4Q96P64 663 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 FAM129BQ96TA1 746 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 EMILIN2Q9BXX0 1053 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 FAM124BQ9H5Z6 455 aaPredicted RBP13.09□□□□□ -0.31
USP42-206ENST00000479544 VPS29Q9UBQ0 182 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 COL4A1P02462 1669 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 ARHGEF33A8MVX0 844 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 C1QAP02745 245 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 DNAJB1P25685 340 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 XKP51811 444 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 CTU2Q2VPK5 515 aaKnown RBP13.09□□□□□ -0.31
USP42-206ENST00000479544 AGAP7PQ5VUJ5 663 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 TMEM207Q6UWW9 146 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 SLC35A5Q9BS91 424 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 BOCQ9BWV1 1114 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 AMBRA1Q9C0C7 1298 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 OR51V1Q9H2C8 321 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 RHBGQ9H310 441 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 AHSPQ9NZD4 102 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 INMT-MINDY4F8WBC2 141 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 CLDN11O75508 207 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 CRYZL1O95825 349 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 HPRP00739 348 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 CELP19835 753 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 RPA4Q13156 261 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 MAB21L1Q13394 359 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 EXOC3L2Q2M3D2 409 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 CATSPEREQ5SY80 951 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 PAMR1Q6UXH9 720 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 SHFQ7M4L6 423 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 DEFB128Q7Z7B8 93 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 ALDH16A1Q8IZ83 802 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 PAPD5Q8NDF8 572 aaKnown RBP13.09□□□□□ -0.31
USP42-206ENST00000479544 RAET1EQ8TD07 263 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 RASSF5Q8WWW0 418 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 TTTY10Q9BZA0 68 aa13.09□□□□□ -0.31
USP42-206ENST00000479544 ELAC1Q9H777 363 aaKnown RBP13.09□□□□□ -0.31
USP42-206ENST00000479544 STX16O14662 325 aa13.08□□□□□ -0.31
USP42-206ENST00000479544 SMAD9O15198 467 aaKnown RBP13.08□□□□□ -0.31
USP42-206ENST00000479544 PDYNP01213 254 aa13.08□□□□□ -0.31
USP42-206ENST00000479544 FGF4P08620 206 aa13.08□□□□□ -0.31
USP42-206ENST00000479544 HRH2P25021 359 aa13.08□□□□□ -0.31
USP42-206ENST00000479544 SLC9A3P48764 834 aa13.08□□□□□ -0.31
USP42-206ENST00000479544 TAS2R41P59536 307 aa13.08□□□□□ -0.31
USP42-206ENST00000479544 PRSS48Q7RTY5 328 aa13.08□□□□□ -0.31
USP42-206ENST00000479544 LHFPL3Q86UP9 236 aa13.08□□□□□ -0.31
USP42-206ENST00000479544 ZMIZ2Q8NF64 920 aa13.08□□□□□ -0.31
USP42-206ENST00000479544 EFHD2Q96C19 240 aaPredicted RBP13.08□□□□□ -0.31
USP42-206ENST00000479544 ZNF583Q96ND8 569 aa13.08□□□□□ -0.31
USP42-206ENST00000479544 BCORQ6W2J9 1755 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 PTTG1O95997 202 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 PPIBP23284 216 aaKnown RBP13.08□□□□□ -0.32
USP42-206ENST00000479544 HOXD10P28358 340 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 MAP2K5Q13163 448 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 DUOXA1Q1HG43 343 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 TRIM71Q2Q1W2 868 aaKnown RBP13.08□□□□□ -0.32
USP42-206ENST00000479544 KCTD11Q693B1 232 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 ZNF730Q6ZMV8 503 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 RBM23Q86U06 439 aaKnown RBP13.08□□□□□ -0.32
USP42-206ENST00000479544 TSPYL5Q86VY4 417 aaPredicted RBP13.08□□□□□ -0.32
USP42-206ENST00000479544 TICAM1Q8IUC6 712 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 OR2T11Q8NH01 316 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 DEDD2Q8WXF8 326 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 ING5Q8WYH8 240 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 GSDMCQ9BYG8 508 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 PPIL3Q9H2H8 161 aaKnown RBP13.08□□□□□ -0.32
USP42-206ENST00000479544 NANSQ9NR45 359 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 B3GNT3Q9Y2A9 372 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 GPSM3Q9Y4H4 160 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 A0A1B0GW55 424 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 A0A1W2PQ09 198 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 STX11O75558 287 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 SLC10A3P09131 477 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 DUX4L2P0CJ85 424 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 DUX4L3P0CJ86 424 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 DUX4L4P0CJ87 422 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 DUX4L5P0CJ88 424 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 DUX4L6P0CJ89 424 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 DUX4L7P0CJ90 424 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 PRKACBP22694 351 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 ARNTP27540 789 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 RPS26P62854 115 aaKnown RBP13.08□□□□□ -0.32
USP42-206ENST00000479544 SEMA3AQ14563 771 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 USP41Q3LFD5 358 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 FBXO43Q4G163 708 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 PKDCCQ504Y2 493 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 RNF180Q86T96 592 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 ARHGAP12Q8IWW6 846 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 GOLM1Q8NBJ4 401 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 MUL1Q969V5 352 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 RAD51AP1Q96B01 352 aa13.08□□□□□ -0.32
USP42-206ENST00000479544 MAELQ96JY0 434 aaKnown RBP13.08□□□□□ -0.32
USP42-206ENST00000479544 CENPOQ9BU64 300 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms