RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 MANSC4A6NHS7 340 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-209ENST00000472056 CDRT1O95170 752 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 IL32P24001 234 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 NKX6-1P78426 367 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-209ENST00000472056 MRPS10P82664 201 aaKnown RBP12.94□□□□□ -0.34
COL6A3-209ENST00000472056 GLT8D1Q68CQ7 371 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 ZBTB46Q86UZ6 589 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 TSPYL5Q86VY4 417 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-209ENST00000472056 NAT8LQ8N9F0 302 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 OR51V1Q9H2C8 321 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 FAM83DQ9H4H8 585 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 NUP188Q5SRE5 1749 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 BLKP51451 505 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 EN1Q05925 392 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-209ENST00000472056 RAB39AQ14964 217 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 SVBPQ8N300 66 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 SYNPOQ8N3V7 929 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 NKD1Q969G9 470 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 SLIT2O94813 1529 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 FAM149AA5PLN7 773 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 SPTLC1O15269 473 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 CREG1O75629 220 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 SNAPINO95295 136 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 RBMXP38159 391 aaKnown RBP12.94□□□□□ -0.34
COL6A3-209ENST00000472056 INHBEP58166 350 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 PUS10Q3MIT2 529 aaKnown RBP12.94□□□□□ -0.34
COL6A3-209ENST00000472056 SCGB2B2Q4G0G5 96 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 PTPN20Q4JDL3 420 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 ATAT1Q5SQI0 421 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 PRSS48Q7RTY5 328 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 ZNF675Q8TD23 568 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 ACDQ96AP0 544 aa12.94□□□□□ -0.34
COL6A3-209ENST00000472056 SAV1Q9H4B6 383 aaPredicted RBP12.94□□□□□ -0.34
COL6A3-209ENST00000472056 YDJCA8MPS7 323 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 ZNF705EA8MWA4 302 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-209ENST00000472056 SCDO00767 359 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 ETFAP13804 333 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 HLCSP50747 726 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 S100A10P60903 97 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 NAE1Q13564 534 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 IKBKEQ14164 716 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 BTG3Q14201 252 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-209ENST00000472056 EIF4HQ15056 248 aaKnown RBP12.93□□□□□ -0.34
COL6A3-209ENST00000472056 TMEM69Q5SWH9 247 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 MARCH9Q86YJ5 346 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 HCAR2Q8TDS4 363 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 FCRL5Q96RD9 977 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 TSPAN3O60637 253 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 BANF1O75531 89 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 IFNA5P01569 189 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 H2AFB2P0C5Z0 115 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 CD79BP40259 229 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 EIF2DP41214 584 aaKnown RBP12.93□□□□□ -0.34
COL6A3-209ENST00000472056 TRAM2Q15035 370 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 TSTQ16762 297 aaKnown RBP12.93□□□□□ -0.34
COL6A3-209ENST00000472056 PAN2Q504Q3 1202 aaKnown RBP12.93□□□□□ -0.34
COL6A3-209ENST00000472056 PAOXQ6QHF9 649 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 TPGS1Q6ZTW0 290 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 HS3ST5Q8IZT8 346 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 DERL2Q9GZP9 239 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 RHBGQ9H310 441 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 LAMP5Q9UJQ1 280 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 FAM186AA6NE01 2351 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 SULT1B1O43704 296 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 EPOP01588 193 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 HTR2BP41595 481 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 TCEAL1Q15170 157 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 TGFBIQ15582 683 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 PROX2Q3B8N5 592 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 GPR22Q99680 433 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 RSPH9Q9H1X1 276 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-209ENST00000472056 CHRAC1Q9NRG0 131 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 ARMC1Q9NVT9 282 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 SIRPGQ9P1W8 387 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 SH2B3Q9UQQ2 575 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 C17orf113A0A1B0GUU1 675 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 GRXCR2A6NFK2 248 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 PCDH7O60245 1069 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 HOXB9P17482 250 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-209ENST00000472056 C1QTNF8P60827 252 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 AKR1C8PQ5T2L2 129 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 MRPL41Q8IXM3 137 aaKnown RBP12.93□□□□□ -0.34
COL6A3-209ENST00000472056 BEST3Q8N1M1 668 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 YIPF7Q8N8F6 280 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 TMEM246Q9BRR3 403 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 TOR3AQ9H497 397 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 ERVK-19Q9WJR5 959 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 PHRF1Q9P1Y6 1649 aaKnown RBP12.93□□□□□ -0.34
COL6A3-209ENST00000472056 CPSF4LA6NMK7 179 aaKnown RBP12.93□□□□□ -0.34
COL6A3-209ENST00000472056 KRBOX1C9JBD0 128 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 ABCG1P45844 678 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 VEGFCP49767 419 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 ZNF101Q8IZC7 436 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 MS4A15Q8N5U1 240 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 PCDHB11Q9Y5F2 797 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 HTRA2O43464 458 aaPredicted RBP12.93□□□□□ -0.34
COL6A3-209ENST00000472056 MFSD11O43934 449 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 SLC6A6P31641 620 aa12.93□□□□□ -0.34
COL6A3-209ENST00000472056 PUM1Q14671 1186 aaKnown RBP eCLIP12.93□□□□□ -0.34
COL6A3-209ENST00000472056 FAM199XQ6PEV8 388 aaPredicted RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms