RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 SPANXN3Q5MJ09 141 aa16.51■□□□□ 0.23
COL7A1-208ENST00000470076 C1QL3Q5VWW1 255 aa16.51■□□□□ 0.23
COL7A1-208ENST00000470076 CAPN13Q6MZZ7 669 aaPredicted RBP16.51■□□□□ 0.23
COL7A1-208ENST00000470076 PAQR3Q6TCH7 311 aa16.51■□□□□ 0.23
COL7A1-208ENST00000470076 GFRALQ6UXV0 394 aa16.51■□□□□ 0.23
COL7A1-208ENST00000470076 MBOAT1Q6ZNC8 495 aa16.51■□□□□ 0.23
COL7A1-208ENST00000470076 KIAA0408Q6ZU52 694 aa16.51■□□□□ 0.23
COL7A1-208ENST00000470076 SLC26A11Q86WA9 606 aa16.51■□□□□ 0.23
COL7A1-208ENST00000470076 TICAM1Q8IUC6 712 aa16.51■□□□□ 0.23
COL7A1-208ENST00000470076 CNTN4Q8IWV2 1026 aa16.51■□□□□ 0.23
COL7A1-208ENST00000470076 KCT2Q8NC54 265 aa16.51■□□□□ 0.23
COL7A1-208ENST00000470076 ZCCHC10Q8TBK6 192 aa16.51■□□□□ 0.23
COL7A1-208ENST00000470076 SLC13A3Q8WWT9 602 aa16.51■□□□□ 0.23
COL7A1-208ENST00000470076 HIST1H2AHQ96KK5 128 aa16.51■□□□□ 0.23
COL7A1-208ENST00000470076 ZNF354BQ96LW1 612 aa16.51■□□□□ 0.23
COL7A1-208ENST00000470076 OSBPL9Q96SU4 736 aa16.51■□□□□ 0.23
COL7A1-208ENST00000470076 HIST1H2AJQ99878 128 aa16.51■□□□□ 0.23
COL7A1-208ENST00000470076 HAUS8Q9BT25 410 aa16.51■□□□□ 0.23
COL7A1-208ENST00000470076 H2AFJQ9BTM1 129 aa16.51■□□□□ 0.23
COL7A1-208ENST00000470076 SH2B3Q9UQQ2 575 aa16.51■□□□□ 0.23
COL7A1-208ENST00000470076 ENTPD4Q9Y227 616 aa16.51■□□□□ 0.23
COL7A1-208ENST00000470076 SLC22A7Q9Y694 548 aa16.51■□□□□ 0.23
COL7A1-208ENST00000470076 IGHV3-20A0A0C4DH32 117 aa16.5■□□□□ 0.23
COL7A1-208ENST00000470076 FEZF1A0PJY2 475 aa16.5■□□□□ 0.23
COL7A1-208ENST00000470076 PABPN1LA6NDY0 278 aaKnown RBP16.5■□□□□ 0.23
COL7A1-208ENST00000470076 A8MUI8 341 aa16.5■□□□□ 0.23
COL7A1-208ENST00000470076 LCMT2O60294 686 aaKnown RBP16.5■□□□□ 0.23
COL7A1-208ENST00000470076 CDH1P12830 882 aa16.5■□□□□ 0.23
COL7A1-208ENST00000470076 NPPBP16860 134 aa16.5■□□□□ 0.23
COL7A1-208ENST00000470076 IL10P22301 178 aa16.5■□□□□ 0.23
COL7A1-208ENST00000470076 GABRB3P28472 473 aa16.5■□□□□ 0.23
COL7A1-208ENST00000470076 DHX9Q08211 1270 aaKnown RBP16.5■□□□□ 0.23
COL7A1-208ENST00000470076 EXT1Q16394 746 aa16.5■□□□□ 0.23
COL7A1-208ENST00000470076 PHKG1Q16816 387 aa16.5■□□□□ 0.23
COL7A1-208ENST00000470076 H3F3CQ6NXT2 135 aa16.5■□□□□ 0.23
COL7A1-208ENST00000470076 ANKRD37Q7Z713 158 aa16.5■□□□□ 0.23
COL7A1-208ENST00000470076 GALNT7Q86SF2 657 aa16.5■□□□□ 0.23
COL7A1-208ENST00000470076 MFSD9Q8NBP5 474 aa16.5■□□□□ 0.23
COL7A1-208ENST00000470076 ALKBH8Q96BT7 664 aaKnown RBP16.5■□□□□ 0.23
COL7A1-208ENST00000470076 LINGO1Q96FE5 620 aa16.5■□□□□ 0.23
COL7A1-208ENST00000470076 ENO4A6NNW6 628 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 CES2O00748 559 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 DNALI1O14645 258 aaPredicted RBP16.49■□□□□ 0.23
COL7A1-208ENST00000470076 RDH16O75452 317 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 UNC5CO95185 931 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 AHSGP02765 367 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 CCR8P51685 355 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 CDKN2DP55273 166 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 AP1S2P56377 157 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 IL2P60568 153 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 HERC3Q15034 1050 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.49■□□□□ 0.23
COL7A1-208ENST00000470076 ACER2Q5QJU3 275 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 RBM20Q5T481 1227 aaKnown RBP16.49■□□□□ 0.23
COL7A1-208ENST00000470076 DUPD1Q68J44 220 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 TMEM207Q6UWW9 146 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 PDSS2Q86YH6 399 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 AMER2Q8N7J2 671 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 ABHD11Q8NFV4 315 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 M1APQ8TC57 530 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 CERS2Q96G23 380 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 OR1F2PQ96R84 312 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 SARGQ9BW04 601 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 TRIM54Q9BYV2 358 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 ARL15Q9NXU5 204 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 SEC14L3Q9UDX4 400 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 ASIC3Q9UHC3 531 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 NAALAD2Q9Y3Q0 740 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 PCDHGB6Q9Y5F9 930 aa16.49■□□□□ 0.23
COL7A1-208ENST00000470076 APCP25054 2843 aa16.48■□□□□ 0.23
COL7A1-208ENST00000470076 HNRNPRO43390 633 aaKnown RBP16.48■□□□□ 0.23
COL7A1-208ENST00000470076 TSPAN12O95859 305 aa16.48■□□□□ 0.23
COL7A1-208ENST00000470076 SKP1P63208 163 aa16.48■□□□□ 0.23
COL7A1-208ENST00000470076 PDAP1Q13442 181 aaKnown RBP16.48■□□□□ 0.23
COL7A1-208ENST00000470076 NSDHLQ15738 373 aa16.48■□□□□ 0.23
COL7A1-208ENST00000470076 ZNF766Q5HY98 468 aa16.48■□□□□ 0.23
COL7A1-208ENST00000470076 NIPAL1Q6NVV3 410 aa16.48■□□□□ 0.23
COL7A1-208ENST00000470076 SHISA5Q8N114 240 aa16.48■□□□□ 0.23
COL7A1-208ENST00000470076 SLC35F6Q8N357 371 aa16.48■□□□□ 0.23
COL7A1-208ENST00000470076 TBC1D19Q8N5T2 526 aa16.48■□□□□ 0.23
COL7A1-208ENST00000470076 PLPP5Q8NEB5 264 aa16.48■□□□□ 0.23
COL7A1-208ENST00000470076 OR4K1Q8NGD4 311 aa16.48■□□□□ 0.23
COL7A1-208ENST00000470076 OR56A3Q8NH54 315 aa16.48■□□□□ 0.23
COL7A1-208ENST00000470076 ATL1Q8WXF7 558 aa16.48■□□□□ 0.23
COL7A1-208ENST00000470076 SLCO2A1Q92959 643 aa16.48■□□□□ 0.23
COL7A1-208ENST00000470076 SNF8Q96H20 258 aa16.48■□□□□ 0.23
COL7A1-208ENST00000470076 KCNK13Q9HB14 408 aa16.48■□□□□ 0.23
COL7A1-208ENST00000470076 MMP25Q9NPA2 562 aa16.48■□□□□ 0.23
COL7A1-208ENST00000470076 COPG2Q9UBF2 871 aa16.48■□□□□ 0.23
COL7A1-208ENST00000470076 SUCOQ9UBS9 1254 aaKnown RBP16.48■□□□□ 0.23
COL7A1-208ENST00000470076 CORO1CQ9ULV4 474 aaPredicted RBP16.48■□□□□ 0.23
COL7A1-208ENST00000470076 TRBC2A0A5B9 178 aa16.47■□□□□ 0.23
COL7A1-208ENST00000470076 OR2W5A6NFC9 320 aa16.47■□□□□ 0.23
COL7A1-208ENST00000470076 MAGEB17A8MXT2 336 aa16.47■□□□□ 0.23
COL7A1-208ENST00000470076 NDUFS4O43181 175 aa16.47■□□□□ 0.23
COL7A1-208ENST00000470076 BANF1O75531 89 aa16.47■□□□□ 0.23
COL7A1-208ENST00000470076 MST1P26927 711 aa16.47■□□□□ 0.23
COL7A1-208ENST00000470076 RHAGQ02094 409 aa16.47■□□□□ 0.23
COL7A1-208ENST00000470076 RBPJQ06330 500 aa16.47■□□□□ 0.23
COL7A1-208ENST00000470076 PWP1Q13610 501 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms