RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 ANKRD28O15084 1053 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 MDM4O15151 490 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 PPIP5K2O43314 1243 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 HS6ST1O60243 411 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 HSF2BPO75031 334 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 SAP30O75446 220 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 CSDE1O75534 798 aaKnown RBP4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 UFL1O94874 794 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 LCA5LO95447 670 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 CER1O95813 267 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 TRUB2O95900 331 aaKnown RBP4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 KRT19P08727 400 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 FGF2P09038 288 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 GOLGA8HP0CJ92 632 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 ACP5P13686 325 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 TCF4P15884 667 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 CCT3P49368 545 aaKnown RBP4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 CCR4P51679 360 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 RPL23AP62750 156 aaKnown RBP4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 SPOCK1Q08629 439 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 MERTKQ12866 999 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 ENPP2Q13822 863 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 PDE7AQ13946 482 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 USF2Q15853 346 aaPredicted RBP4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 KYAT1Q16773 422 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 HKDC1Q2TB90 917 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 TTMPQ5BVD1 217 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 PAGE2BQ5JRK9 111 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 C6orf163Q5TEZ5 329 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 ABLIM2Q6H8Q1 611 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 NAPEPLDQ6IQ20 393 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 DLK2Q6UY11 383 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 GLDNQ6ZMI3 551 aaPredicted RBP4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 RBM44Q6ZP01 1051 aaKnown RBP4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 C11orf57Q6ZUT1 292 aaPredicted RBP4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 COPS6Q7L5N1 327 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 RRM2BQ7LG56 351 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 SLC46A3Q7Z3Q1 461 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 MFN1Q8IWA4 741 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 GPR65Q8IYL9 337 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 CENPLQ8N0S6 344 aaPredicted RBP4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 CADM3Q8N126 398 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 ZBTB2Q8N680 514 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 ZNF781Q8N8C0 355 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 NECAB1Q8N987 351 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 ZNF680Q8NEM1 530 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 RDM1Q8NG50 284 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 NCOA7Q8NI08 942 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 C9orf43Q8TAL5 461 aaPredicted RBP4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 NDNFQ8TB73 568 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 TAS1R2Q8TE23 839 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 TCP11Q8WWU5 503 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 PSPC1Q8WXF1 523 aaKnown RBP4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 SPDL1Q96EA4 605 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 C16orf58Q96GQ5 468 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 SLC29A1Q99808 456 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 CLSTN3Q9BQT9 956 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 MTIF3Q9H2K0 278 aaKnown RBP4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 GOLPH3LQ9H4A5 285 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 PLK3Q9H4B4 646 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 RGCCQ9H4X1 137 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 NEK6Q9HC98 313 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 SMARCAL1Q9NZC9 954 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 OR6C3Q9NZP0 311 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 TUBGCP4Q9UGJ1 667 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 HAO1Q9UJM8 370 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 FBXW11Q9UKB1 542 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 PLAGL1Q9UM63 463 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 BZW2Q9Y6E2 419 aaKnown RBP4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 SPATA31A1Q5TZJ5 1347 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 NCOA3Q9Y6Q9 1424 aa4.62□□□□□ -1.67
CCDC88A-210ENST00000468534 A0A1B0GVM2 712 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 MEX3AA1L020 520 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 ANKDD1BA6NHY2 528 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 OR2AG2A6NM03 316 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 ZNF814B7Z6K7 855 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 PRSS44E7EML9 344 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 SLCO1B7G3V0H7 640 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 FPGTO14772 594 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 PLRG1O43660 514 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 CALUO43852 315 aaPredicted RBP4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 ECE2O60344 883 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 HBP1O60381 514 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 CCNT2O60583 730 aaKnown RBP4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 SELENOFO60613 162 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 SNAI1O95863 264 aaPredicted RBP4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 MBD3O95983 291 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 UGT2B4P06133 528 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 SBK2P0C263 348 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 OR52Z1P0C646 297 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 G6PDP11413 515 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 ATP6V1C1P21283 382 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 MSR1P21757 451 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 UCP1P25874 307 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 TIA1P31483 386 aaKnown RBP eCLIP4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 AKT2P31751 481 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 SLC7A2P52569 658 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 RAB14P61106 215 aa4.61□□□□□ -1.67
CCDC88A-210ENST00000468534 PSMC5P62195 406 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms