RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 LDB3O75112 727 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 UFL1O94874 794 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 SOX30O94993 753 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 PGLSO95336 258 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 ZNF18P17022 549 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 CD22P20273 847 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 MPZP25189 248 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 CALML3P27482 149 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 HOXD3P31249 432 aaPredicted RBP3.91□□□□□ -1.78
VPS29-202ENST00000447578 BTDP43251 543 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 LHX1P48742 406 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 NT5C2P49902 561 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 KHKP50053 298 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 MXI1P50539 228 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 NUDT6P53370 316 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 MAPK12P53778 367 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 TPD52P55327 224 aaPredicted RBP3.91□□□□□ -1.78
VPS29-202ENST00000447578 STX17P56962 302 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 YBEYP58557 167 aaPredicted RBP3.91□□□□□ -1.78
VPS29-202ENST00000447578 COG7P83436 770 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 TNK1Q13470 666 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 HNF4GQ14541 408 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 SYCP1Q15431 976 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 IL17AQ16552 155 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 CDO1Q16878 200 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 FUT11Q495W5 492 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 MDH1BQ5I0G3 518 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 TCTE1Q5JU00 501 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 SPOUT1Q5T280 376 aaKnown RBP3.91□□□□□ -1.78
VPS29-202ENST00000447578 PRR27Q6MZM9 219 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 TMPRSS11FQ6ZWK6 438 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 CATSPER4Q7RTX7 472 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 RABEPKQ7Z6M1 372 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 BLIDQ8IZY5 108 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 C1orf52Q8N6N3 182 aaKnown RBP3.91□□□□□ -1.78
VPS29-202ENST00000447578 OR5R1Q8NH85 324 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 THAP6Q8TBB0 222 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 ST7LQ8TDW4 575 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 UBLCP1Q8WVY7 318 aaPredicted RBP3.91□□□□□ -1.78
VPS29-202ENST00000447578 SMPDL3BQ92485 455 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 SYN2Q92777 582 aaPredicted RBP3.91□□□□□ -1.78
VPS29-202ENST00000447578 MOB3AQ96BX8 217 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 ZNF582Q96NG8 517 aaPredicted RBP3.91□□□□□ -1.78
VPS29-202ENST00000447578 SLX1AQ9BQ83 275 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 LMF2Q9BU23 707 aaKnown RBP3.91□□□□□ -1.78
VPS29-202ENST00000447578 BLZF1Q9H2G9 400 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 SLA2Q9H6Q3 261 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 CD209Q9NNX6 404 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 NOX4Q9NPH5 578 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 SAMSN1Q9NSI8 373 aaKnown RBP3.91□□□□□ -1.78
VPS29-202ENST00000447578 DNAJC17Q9NVM6 304 aaKnown RBP3.91□□□□□ -1.78
VPS29-202ENST00000447578 OSER1Q9NX31 292 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 CGNQ9P2M7 1197 aaKnown RBP3.91□□□□□ -1.78
VPS29-202ENST00000447578 FBXL5Q9UKA1 691 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 FZD10Q9ULW2 581 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 V9GYY5 206 aaPredicted RBP3.91□□□□□ -1.78
VPS29-202ENST00000447578 MYH7P12883 1935 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 FAM205AQ6ZU69 1335 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 SYNRGQ9UMZ2 1314 aa3.91□□□□□ -1.78
VPS29-202ENST00000447578 SCN7AQ01118 1682 aa3.9□□□□□ -1.78
VPS29-202ENST00000447578 COL5A3P25940 1745 aaPredicted RBP3.9□□□□□ -1.78
VPS29-202ENST00000447578 IGHV4-28A0A0C4DH34 117 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 A0A1W2PPW3 197 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 ELOVL7A1L3X0 281 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 KRT87PA6NCN2 255 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 NEMP2A6NFY4 417 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 ZSCAN12O43309 604 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 SEC22BO75396 215 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 LUC7L3O95232 432 aaKnown RBP3.9□□□□□ -1.79
VPS29-202ENST00000447578 BMP10O95393 424 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 ZBTB11O95625 1053 aaPredicted RBP3.9□□□□□ -1.79
VPS29-202ENST00000447578 IGHV2-70P01814 119 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 SERPINB2P05120 415 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 GOLGA8HP0CJ92 632 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 SPP1P10451 314 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 SAGP10523 405 aaPredicted RBP3.9□□□□□ -1.79
VPS29-202ENST00000447578 LBPP18428 481 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 MAPK3P27361 379 aaPredicted RBP3.9□□□□□ -1.79
VPS29-202ENST00000447578 HSD17B3P37058 310 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 SLC12A3P55017 1021 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 HILS1P60008 231 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 CBX1P83916 185 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 RPS6KA1Q15418 735 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 KRTAP24-1Q3LI83 254 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 FILIP1LQ4L180 1135 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 SPECC1LQ69YQ0 1117 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 PRR5LQ6MZQ0 368 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 C15orf52Q6ZUT6 534 aaKnown RBP3.9□□□□□ -1.79
VPS29-202ENST00000447578 BTN2A1Q7KYR7 527 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 C16orf82Q7Z2V1 217 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 PHLDB2Q86SQ0 1253 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 COMMD2Q86X83 199 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 CNTN4Q8IWV2 1026 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 LPCAT1Q8NF37 534 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 CCDC148Q8NFR7 591 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 SEMA4DQ92854 862 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 KLHL5Q96PQ7 755 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 GSDMAQ96QA5 445 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 PCYT2Q99447 389 aa3.9□□□□□ -1.79
VPS29-202ENST00000447578 PLIN2Q99541 437 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms