RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 SAR1AQ9NR31 198 aa22.02■■□□□ 1.12
CPSF4-204ENST00000436336 RXFP3Q9NSD7 469 aa22.02■■□□□ 1.12
CPSF4-204ENST00000436336 CUL9Q8IWT3 2517 aa22.02■■□□□ 1.12
CPSF4-204ENST00000436336 EBAG9O00559 213 aa22.01■■□□□ 1.11
CPSF4-204ENST00000436336 CTSVO60911 334 aa22.01■■□□□ 1.11
CPSF4-204ENST00000436336 SEC22BO75396 215 aa22.01■■□□□ 1.11
CPSF4-204ENST00000436336 ETHE1O95571 254 aa22.01■■□□□ 1.11
CPSF4-204ENST00000436336 TGFB1P01137 390 aa22.01■■□□□ 1.11
CPSF4-204ENST00000436336 ALDOCP09972 364 aaKnown RBP22.01■■□□□ 1.11
CPSF4-204ENST00000436336 CD59P13987 128 aa22.01■■□□□ 1.11
CPSF4-204ENST00000436336 CSF2RBP32927 897 aa22.01■■□□□ 1.11
CPSF4-204ENST00000436336 CYP4F2P78329 520 aa22.01■■□□□ 1.11
CPSF4-204ENST00000436336 CFHR1Q03591 330 aa22.01■■□□□ 1.11
CPSF4-204ENST00000436336 EMX2Q04743 252 aa22.01■■□□□ 1.11
CPSF4-204ENST00000436336 ZIC1Q15915 447 aa22.01■■□□□ 1.11
CPSF4-204ENST00000436336 RFTN2Q52LD8 501 aaPredicted RBP22.01■■□□□ 1.11
CPSF4-204ENST00000436336 RNF44Q7L0R7 432 aa22.01■■□□□ 1.11
CPSF4-204ENST00000436336 FITM2Q8N6M3 262 aa22.01■■□□□ 1.11
CPSF4-204ENST00000436336 CREB3L4Q8TEY5 395 aa22.01■■□□□ 1.11
CPSF4-204ENST00000436336 ZFYVE21Q9BQ24 234 aa22.01■■□□□ 1.11
CPSF4-204ENST00000436336 PARD6AQ9NPB6 346 aa22.01■■□□□ 1.11
CPSF4-204ENST00000436336 MRGBPQ9NV56 204 aa22.01■■□□□ 1.11
CPSF4-204ENST00000436336 ASCC3Q8N3C0 2202 aaKnown RBP22.01■■□□□ 1.11
CPSF4-204ENST00000436336 SLC9B1P1A6NJY1 282 aa22■■□□□ 1.11
CPSF4-204ENST00000436336 KIF1CO43896 1103 aaKnown RBP22■■□□□ 1.11
CPSF4-204ENST00000436336 CKMT2P17540 419 aa22■■□□□ 1.11
CPSF4-204ENST00000436336 RPL38P63173 70 aaKnown RBP22■■□□□ 1.11
CPSF4-204ENST00000436336 IRX1P78414 480 aaPredicted RBP22■■□□□ 1.11
CPSF4-204ENST00000436336 CYP4F3Q08477 520 aa22■■□□□ 1.11
CPSF4-204ENST00000436336 CUL3Q13618 768 aa22■■□□□ 1.11
CPSF4-204ENST00000436336 KIAA0040Q15053 153 aa22■■□□□ 1.11
CPSF4-204ENST00000436336 C6orf89Q6UWU4 347 aa22■■□□□ 1.11
CPSF4-204ENST00000436336 PRR23CQ6ZRP0 262 aa22■■□□□ 1.11
CPSF4-204ENST00000436336 USP53Q70EK8 1073 aa22■■□□□ 1.11
CPSF4-204ENST00000436336 TCTN2Q96GX1 697 aa22■■□□□ 1.11
CPSF4-204ENST00000436336 OR2A5Q96R48 311 aa22■■□□□ 1.11
CPSF4-204ENST00000436336 G3BP2Q9UN86 482 aaKnown RBP22■■□□□ 1.11
CPSF4-204ENST00000436336 TMED5Q9Y3A6 229 aa22■■□□□ 1.11
CPSF4-204ENST00000436336 FRYLO94915 3013 aa22■■□□□ 1.11
CPSF4-204ENST00000436336 A0A0J9YVX5 310 aa22■■□□□ 1.11
CPSF4-204ENST00000436336 FOXD2O60548 495 aaPredicted RBP22■■□□□ 1.11
CPSF4-204ENST00000436336 TBX6O95947 436 aaPredicted RBP22■■□□□ 1.11
CPSF4-204ENST00000436336 PARP9Q8IXQ6 854 aa22■■□□□ 1.11
CPSF4-204ENST00000436336 CPSF7Q8N684 471 aaKnown RBP22■■□□□ 1.11
CPSF4-204ENST00000436336 ERP27Q96DN0 273 aa22■■□□□ 1.11
CPSF4-204ENST00000436336 APIPQ96GX9 242 aa22■■□□□ 1.11
CPSF4-204ENST00000436336 OR51B5Q9H339 312 aa22■■□□□ 1.11
CPSF4-204ENST00000436336 LRRN3Q9H3W5 708 aa22■■□□□ 1.11
CPSF4-204ENST00000436336 ZNF385DQ9H6B1 395 aa22■■□□□ 1.11
CPSF4-204ENST00000436336 NOP53Q9NZM5 478 aaKnown RBP22■■□□□ 1.11
CPSF4-204ENST00000436336 FTSJ1Q9UET6 329 aa22■■□□□ 1.11
CPSF4-204ENST00000436336 PRAMEF10O60809 474 aa21.99■■□□□ 1.11
CPSF4-204ENST00000436336 CPNE6O95741 557 aa21.99■■□□□ 1.11
CPSF4-204ENST00000436336 RPLP0P05388 317 aaKnown RBP21.99■■□□□ 1.11
CPSF4-204ENST00000436336 ACP1P24666 158 aa21.99■■□□□ 1.11
CPSF4-204ENST00000436336 CCL7P80098 99 aa21.99■■□□□ 1.11
CPSF4-204ENST00000436336 GSTA3Q16772 222 aa21.99■■□□□ 1.11
CPSF4-204ENST00000436336 OTOGLQ3ZCN5 2332 aa21.99■■□□□ 1.11
CPSF4-204ENST00000436336 AASDHQ4L235 1098 aaPredicted RBP21.99■■□□□ 1.11
CPSF4-204ENST00000436336 SPIN4Q56A73 249 aa21.99■■□□□ 1.11
CPSF4-204ENST00000436336 DEPDC1Q5TB30 811 aa21.99■■□□□ 1.11
CPSF4-204ENST00000436336 CACHD1Q5VU97 1274 aa21.99■■□□□ 1.11
CPSF4-204ENST00000436336 KHDRBS2Q5VWX1 349 aaKnown RBP21.99■■□□□ 1.11
CPSF4-204ENST00000436336 TMEM71Q6P5X7 295 aa21.99■■□□□ 1.11
CPSF4-204ENST00000436336 CLNKQ7Z7G1 428 aa21.99■■□□□ 1.11
CPSF4-204ENST00000436336 MARK4Q96L34 752 aa21.99■■□□□ 1.11
CPSF4-204ENST00000436336 FCRL4Q96PJ5 515 aa21.99■■□□□ 1.11
CPSF4-204ENST00000436336 DPYSL5Q9BPU6 564 aa21.99■■□□□ 1.11
CPSF4-204ENST00000436336 C1orf50Q9BV19 199 aa21.99■■□□□ 1.11
CPSF4-204ENST00000436336 CHRNA10Q9GZZ6 450 aa21.99■■□□□ 1.11
CPSF4-204ENST00000436336 SYNPO2LQ9H987 977 aa21.99■■□□□ 1.11
CPSF4-204ENST00000436336 ASIC5Q9NY37 505 aa21.99■■□□□ 1.11
CPSF4-204ENST00000436336 SEMA5BQ9P283 1151 aa21.99■■□□□ 1.11
CPSF4-204ENST00000436336 KLHL3Q9UH77 587 aa21.99■■□□□ 1.11
CPSF4-204ENST00000436336 IGHV5-51A0A0C4DH38 117 aa21.98■■□□□ 1.11
CPSF4-204ENST00000436336 A0A1W2PQM1 296 aa21.98■■□□□ 1.11
CPSF4-204ENST00000436336 CCT8L1PA6NM43 557 aa21.98■■□□□ 1.11
CPSF4-204ENST00000436336 SH3BGRLO75368 114 aa21.98■■□□□ 1.11
CPSF4-204ENST00000436336 RASSF9O75901 435 aa21.98■■□□□ 1.11
CPSF4-204ENST00000436336 SEMA3DO95025 777 aa21.98■■□□□ 1.11
CPSF4-204ENST00000436336 ZBTB11O95625 1053 aaPredicted RBP21.98■■□□□ 1.11
CPSF4-204ENST00000436336 SERPIND1P05546 499 aa21.98■■□□□ 1.11
CPSF4-204ENST00000436336 IDO1P14902 403 aa21.98■■□□□ 1.11
CPSF4-204ENST00000436336 TGM1P22735 817 aa21.98■■□□□ 1.11
CPSF4-204ENST00000436336 ATP4BP51164 291 aa21.98■■□□□ 1.11
CPSF4-204ENST00000436336 TBL3Q12788 808 aaKnown RBP21.98■■□□□ 1.11
CPSF4-204ENST00000436336 UBAP2LQ14157 1087 aaKnown RBP21.98■■□□□ 1.11
CPSF4-204ENST00000436336 CLPPQ16740 277 aaPredicted RBP21.98■■□□□ 1.11
CPSF4-204ENST00000436336 ZC3H12BQ5HYM0 836 aaKnown RBP21.98■■□□□ 1.11
CPSF4-204ENST00000436336 FAM91A1Q658Y4 838 aa21.98■■□□□ 1.11
CPSF4-204ENST00000436336 VN1R4Q7Z5H5 301 aa21.98■■□□□ 1.11
CPSF4-204ENST00000436336 ASPGQ86U10 573 aa21.98■■□□□ 1.11
CPSF4-204ENST00000436336 NAXDQ8IW45 347 aa21.98■■□□□ 1.11
CPSF4-204ENST00000436336 CHTF18Q8WVB6 975 aa21.98■■□□□ 1.11
CPSF4-204ENST00000436336 NUDT22Q9BRQ3 303 aa21.98■■□□□ 1.11
CPSF4-204ENST00000436336 FAM60AQ9NP50 221 aa21.98■■□□□ 1.11
CPSF4-204ENST00000436336 AIG1Q9NVV5 245 aa21.98■■□□□ 1.11
CPSF4-204ENST00000436336 EIF3LQ9Y262 564 aaKnown RBP21.98■■□□□ 1.11
CPSF4-204ENST00000436336 COPG1Q9Y678 874 aaKnown RBP21.98■■□□□ 1.11
CPSF4-204ENST00000436336 ADAMTS20P59510 1910 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms