RNA–Protein interactions for RNA: ENST00000433297.2

HMGCS1-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HMGCS1, Length 3,466 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-202ENST00000433297 B8ZZF3 427 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 CSF3P09919 207 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 SMPD1P17405 629 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 ATF4P18848 351 aaPredicted RBP11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 HTR7P34969 479 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 GPC1P35052 558 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 GPR15P49685 360 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 CLDN8P56748 225 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 MRPL28Q13084 256 aaKnown RBP11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 SERINC3Q13530 473 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 DDX39BQ13838 428 aaKnown RBP11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 XKR4Q5GH76 650 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 LRIF1Q5T3J3 769 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 FAM205BPQ63HN1 556 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 CBLL1Q75N03 491 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 ZNF367Q7RTV3 350 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 APOBEC3FQ8IUX4 373 aaKnown RBP11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 OR8H3Q8N146 312 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 TEX26Q8N6G2 289 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 C19orf18Q8NEA5 215 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 NLGN4YQ8NFZ3 816 aaPredicted RBP11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 OR4M1Q8NGD0 313 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 KCNJ9Q92806 393 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 MYEOVQ96EZ4 313 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 APIPQ96GX9 242 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 COPS8Q99627 209 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 KATNAL1Q9BW62 490 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 CINPQ9BW66 212 aaPredicted RBP11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 FAM126AQ9BYI3 521 aaPredicted RBP11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 C3orf14Q9HBI5 128 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 ASAH2Q9NR71 780 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 TMEM248Q9NWD8 314 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 RHCGQ9UBD6 479 aa11.16□□□□□ -0.62
HMGCS1-202ENST00000433297 A8MUA0 341 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 I3L521 148 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 FEN1P39748 380 aaKnown RBP11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 GZMKP49863 264 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 HNRNPA0Q13151 305 aaKnown RBP11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 EIF4EBP2Q13542 120 aaPredicted RBP11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 GANABQ14697 944 aaKnown RBP11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 ESCO2Q56NI9 601 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 ARTNQ5T4W7 220 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 LIPKQ5VXJ0 399 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 FAM124AQ86V42 546 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 ATCAYQ86WG3 371 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 LSMEM1Q8N8F7 131 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 OR9Q1Q8NGQ5 310 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 PHF21AQ96BD5 680 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 BOCQ9BWV1 1114 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 PLCXD1Q9NUJ7 323 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 UCKL1Q9NWZ5 548 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 SLC23A1Q9UHI7 598 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 VPS9D1Q9Y2B5 631 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 A0A075B6Q4 140 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 RRN3P2A6NIE6 340 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 J3KTA2 159 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 MYCP01106 439 aaPredicted RBP11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 ODC1P11926 461 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 COX7A2P14406 83 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 INPP1P49441 399 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 PSPHP78330 225 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 BNC1Q01954 994 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 TWF1Q12792 350 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 ZNF267Q14586 743 aaPredicted RBP11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 TAF1AQ15573 450 aaPredicted RBP11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 EXOC3L2Q2M3D2 409 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 TOR2AQ5JU69 321 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 DGKKQ5KSL6 1271 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 GLRX5Q86SX6 157 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 RNF130Q86XS8 419 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 PLPP6Q8IY26 295 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 NELL1Q92832 810 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 CD244Q9BZW8 370 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 MCUBQ9NWR8 336 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 ING3Q9NXR8 418 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 ALG5Q9Y673 324 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 THSD7AQ9UPZ6 1657 aa11.15□□□□□ -0.62
HMGCS1-202ENST00000433297 FAM240BA0A1B0GVZ2 78 aa11.15□□□□□ -0.63
HMGCS1-202ENST00000433297 A8MX80 341 aa11.15□□□□□ -0.63
HMGCS1-202ENST00000433297 F8W810 466 aa11.15□□□□□ -0.63
HMGCS1-202ENST00000433297 BTN3A3O00478 584 aa11.15□□□□□ -0.63
HMGCS1-202ENST00000433297 SLC25A14O95258 325 aaPredicted RBP11.15□□□□□ -0.63
HMGCS1-202ENST00000433297 ACPPP15309 386 aa11.15□□□□□ -0.63
HMGCS1-202ENST00000433297 SDC1P18827 310 aa11.15□□□□□ -0.63
HMGCS1-202ENST00000433297 RPS3P23396 243 aaKnown RBP eCLIP11.15□□□□□ -0.631e-11■■■□□ 15.6
HMGCS1-202ENST00000433297 PTPN6P29350 595 aa11.15□□□□□ -0.63
HMGCS1-202ENST00000433297 CLCN7P51798 805 aa11.15□□□□□ -0.63
HMGCS1-202ENST00000433297 CAV3P56539 151 aa11.15□□□□□ -0.63
HMGCS1-202ENST00000433297 GPR19Q15760 415 aa11.15□□□□□ -0.63
HMGCS1-202ENST00000433297 SERPINA11Q86U17 422 aa11.15□□□□□ -0.63
HMGCS1-202ENST00000433297 PTOV1Q86YD1 416 aa11.15□□□□□ -0.63
HMGCS1-202ENST00000433297 SYT12Q8IV01 421 aa11.15□□□□□ -0.63
HMGCS1-202ENST00000433297 BBS7Q8IWZ6 715 aa11.15□□□□□ -0.63
HMGCS1-202ENST00000433297 ATP6V1C2Q8NEY4 427 aa11.15□□□□□ -0.63
HMGCS1-202ENST00000433297 PEX13Q92968 403 aa11.15□□□□□ -0.63
HMGCS1-202ENST00000433297 POLR2J2Q9GZM3 115 aaKnown RBP11.15□□□□□ -0.63
HMGCS1-202ENST00000433297 C11orf16Q9NQ32 467 aa11.15□□□□□ -0.63
HMGCS1-202ENST00000433297 COMMD3Q9UBI1 195 aa11.15□□□□□ -0.63
HMGCS1-202ENST00000433297 FZD4Q9ULV1 537 aa11.15□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms