RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 LMNTD2Q8IXW0 634 aa13.7□□□□□ -0.22
SDC1-204ENST00000429035 AGGF1Q8N302 714 aaeCLIP13.7□□□□□ -0.22
SDC1-204ENST00000429035 KCT2Q8NC54 265 aa13.7□□□□□ -0.22
SDC1-204ENST00000429035 ITLN2Q8WWU7 325 aaPredicted RBP13.7□□□□□ -0.22
SDC1-204ENST00000429035 CCDC120Q96HB5 630 aa13.7□□□□□ -0.22
SDC1-204ENST00000429035 MAGED4Q96JG8 741 aa13.7□□□□□ -0.22
SDC1-204ENST00000429035 IMMP1LQ96LU5 166 aa13.7□□□□□ -0.22
SDC1-204ENST00000429035 CCDC138Q96M89 665 aa13.7□□□□□ -0.22
SDC1-204ENST00000429035 CYTH2Q99418 400 aa13.7□□□□□ -0.22
SDC1-204ENST00000429035 PCBD2Q9H0N5 130 aa13.7□□□□□ -0.22
SDC1-204ENST00000429035 TSPAN10Q9H1Z9 355 aaPredicted RBP13.7□□□□□ -0.22
SDC1-204ENST00000429035 PDE10AQ9Y233 779 aa13.7□□□□□ -0.22
SDC1-204ENST00000429035 CELSR2Q9HCU4 2923 aa13.69□□□□□ -0.22
SDC1-204ENST00000429035 TTI1O43156 1089 aa13.69□□□□□ -0.22
SDC1-204ENST00000429035 C8GP07360 202 aa13.69□□□□□ -0.22
SDC1-204ENST00000429035 HRH2P25021 359 aa13.69□□□□□ -0.22
SDC1-204ENST00000429035 GRNP28799 593 aaKnown RBP13.69□□□□□ -0.22
SDC1-204ENST00000429035 MEF2AQ02078 507 aaPredicted RBP13.69□□□□□ -0.22
SDC1-204ENST00000429035 OC90Q02509 493 aaPredicted RBP13.69□□□□□ -0.22
SDC1-204ENST00000429035 ACTN3Q08043 901 aaPredicted RBP13.69□□□□□ -0.22
SDC1-204ENST00000429035 ABRAXAS2Q15018 415 aa13.69□□□□□ -0.22
SDC1-204ENST00000429035 PPP1R7Q15435 360 aa13.69□□□□□ -0.22
SDC1-204ENST00000429035 SFT2D3Q587I9 215 aa13.69□□□□□ -0.22
SDC1-204ENST00000429035 RBM20Q5T481 1227 aaKnown RBP13.69□□□□□ -0.22
SDC1-204ENST00000429035 PLAG1Q6DJT9 500 aa13.69□□□□□ -0.22
SDC1-204ENST00000429035 MRGPRGQ86SM5 289 aa13.69□□□□□ -0.22
SDC1-204ENST00000429035 CRLF3Q8IUI8 442 aa13.69□□□□□ -0.22
SDC1-204ENST00000429035 MCEMP1Q8IX19 187 aa13.69□□□□□ -0.22
SDC1-204ENST00000429035 EEF1AKMT1Q8WVE0 214 aa13.69□□□□□ -0.22
SDC1-204ENST00000429035 SLC13A3Q8WWT9 602 aa13.69□□□□□ -0.22
SDC1-204ENST00000429035 TSLPQ969D9 159 aa13.69□□□□□ -0.22
SDC1-204ENST00000429035 RELTQ969Z4 430 aa13.69□□□□□ -0.22
SDC1-204ENST00000429035 THAP11Q96EK4 314 aa13.69□□□□□ -0.22
SDC1-204ENST00000429035 MOCOSQ96EN8 888 aa13.69□□□□□ -0.22
SDC1-204ENST00000429035 ZNF354BQ96LW1 612 aa13.69□□□□□ -0.22
SDC1-204ENST00000429035 HES7Q9BYE0 225 aa13.69□□□□□ -0.22
SDC1-204ENST00000429035 TAS2R13Q9NYV9 303 aa13.69□□□□□ -0.22
SDC1-204ENST00000429035 SLC17A6Q9P2U8 582 aa13.69□□□□□ -0.22
SDC1-204ENST00000429035 PPP2R2CQ9Y2T4 447 aa13.69□□□□□ -0.22
SDC1-204ENST00000429035 NAALAD2Q9Y3Q0 740 aa13.69□□□□□ -0.22
SDC1-204ENST00000429035 PGRMC1O00264 195 aaKnown RBP13.68□□□□□ -0.22
SDC1-204ENST00000429035 EIF3FO00303 357 aaPredicted RBP13.68□□□□□ -0.22
SDC1-204ENST00000429035 NDUFS4O43181 175 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 BANF1O75531 89 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 HIST1H2AGP0C0S8 130 aaPredicted RBP13.68□□□□□ -0.22
SDC1-204ENST00000429035 ESRRAP11474 423 aaPredicted RBP13.68□□□□□ -0.22
SDC1-204ENST00000429035 PGAM1P18669 254 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 HIST1H2ADP20671 130 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 CA7P43166 264 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 OLR1P78380 273 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 SP140Q13342 867 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 PDAP1Q13442 181 aaKnown RBP13.68□□□□□ -0.22
SDC1-204ENST00000429035 CRYMQ14894 314 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 EXT1Q16394 746 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 MEP1AQ16819 746 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 ACER2Q5QJU3 275 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 CAPN13Q6MZZ7 669 aaPredicted RBP13.68□□□□□ -0.22
SDC1-204ENST00000429035 PAQR3Q6TCH7 311 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 LCTLQ6UWM7 567 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 PDSS2Q86YH6 399 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 LRRC8AQ8IWT6 810 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 PPIL6Q8IXY8 311 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 GPATCH11Q8N954 259 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 NAT8LQ8N9F0 302 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 OR5T3Q8NGG3 340 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 DNAJB8Q8NHS0 232 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 GABPB2Q8TAK5 448 aaPredicted RBP13.68□□□□□ -0.22
SDC1-204ENST00000429035 GRK7Q8WTQ7 553 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 PYCR2Q96C36 320 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 PBKQ96KB5 322 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 HIST1H2AHQ96KK5 128 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 SIGLEC12Q96PQ1 595 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 NAP1L3Q99457 506 aaPredicted RBP13.68□□□□□ -0.22
SDC1-204ENST00000429035 LPAR4Q99677 370 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 HIST1H2AJQ99878 128 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 UTP23Q9BRU9 249 aaKnown RBP13.68□□□□□ -0.22
SDC1-204ENST00000429035 H2AFJQ9BTM1 129 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 RUBCNLQ9H714 662 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 PARVBQ9HBI1 364 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 PPANQ9NQ55 473 aaKnown RBP13.68□□□□□ -0.22
SDC1-204ENST00000429035 ASIC3Q9UHC3 531 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 CACNA1CQ13936 2221 aa13.68□□□□□ -0.22
SDC1-204ENST00000429035 PKDREJQ9NTG1 2253 aa13.67□□□□□ -0.22
SDC1-204ENST00000429035 GOLGA6L10A0A0M3HER8 536 aa13.67□□□□□ -0.22
SDC1-204ENST00000429035 GABRR3A8MPY1 467 aa13.67□□□□□ -0.22
SDC1-204ENST00000429035 OR1F1O43749 312 aa13.67□□□□□ -0.22
SDC1-204ENST00000429035 LCMT2O60294 686 aaKnown RBP13.67□□□□□ -0.22
SDC1-204ENST00000429035 SLC19A2O60779 497 aa13.67□□□□□ -0.22
SDC1-204ENST00000429035 GUCA1CO95843 209 aa13.67□□□□□ -0.22
SDC1-204ENST00000429035 CYC1P08574 325 aa13.67□□□□□ -0.22
SDC1-204ENST00000429035 CCND1P24385 295 aa13.67□□□□□ -0.22
SDC1-204ENST00000429035 EEF1DP29692 281 aaKnown RBP13.67□□□□□ -0.22
SDC1-204ENST00000429035 MAGEA3P43357 314 aa13.67□□□□□ -0.22
SDC1-204ENST00000429035 OR4D2P58180 307 aa13.67□□□□□ -0.22
SDC1-204ENST00000429035 TAS2R50P59544 299 aa13.67□□□□□ -0.22
SDC1-204ENST00000429035 CCZ1BP86790 482 aa13.67□□□□□ -0.22
SDC1-204ENST00000429035 CCZ1P86791 482 aaPredicted RBP13.67□□□□□ -0.22
SDC1-204ENST00000429035 ALDH6A1Q02252 535 aaKnown RBP13.67□□□□□ -0.22
SDC1-204ENST00000429035 DHX9Q08211 1270 aaKnown RBP13.67□□□□□ -0.22
SDC1-204ENST00000429035 TUBA3CQ13748 450 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms