RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 SYTL3Q4VX76 610 aa14.29□□□□□ -0.12
USP4-203ENST00000415188 C10orf62Q5T681 223 aaPredicted RBP14.29□□□□□ -0.12
USP4-203ENST00000415188 TTC23Q5W5X9 447 aa14.29□□□□□ -0.12
USP4-203ENST00000415188 ISLR2Q6UXK2 745 aa14.29□□□□□ -0.12
USP4-203ENST00000415188 SLC36A4Q6YBV0 504 aa14.29□□□□□ -0.12
USP4-203ENST00000415188 DET1Q7L5Y6 550 aa14.29□□□□□ -0.12
USP4-203ENST00000415188 GPR180Q86V85 440 aa14.29□□□□□ -0.12
USP4-203ENST00000415188 ZDHHC13Q8IUH4 622 aa14.29□□□□□ -0.12
USP4-203ENST00000415188 VRK3Q8IV63 474 aa14.29□□□□□ -0.12
USP4-203ENST00000415188 OSBPL10Q9BXB5 764 aa14.29□□□□□ -0.12
USP4-203ENST00000415188 TIMMDC1Q9NPL8 285 aa14.29□□□□□ -0.12
USP4-203ENST00000415188 DCAF13Q9NV06 445 aaKnown RBP14.29□□□□□ -0.12
USP4-203ENST00000415188 DLGAP4Q9Y2H0 992 aa14.29□□□□□ -0.12
USP4-203ENST00000415188 ACACBO00763 2458 aa14.29□□□□□ -0.12
USP4-203ENST00000415188 A0A1B0GTW7 788 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 AREL1O15033 823 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 ZNF217O75362 1048 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 LEFTY1O75610 366 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 CREG1O75629 220 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 CFIP05156 583 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 ALPLP05186 524 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 HALP42357 657 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 PRLHRP49683 370 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 PFN3P60673 137 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 IRF8Q02556 426 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 CHIT1Q13231 466 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 ENPP2Q13822 863 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 ZNF234Q14588 700 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 ZXDCQ2QGD7 858 aaPredicted RBP14.28□□□□□ -0.12
USP4-203ENST00000415188 UAP1L1Q3KQV9 507 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 PLA2G4EQ3MJ16 856 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 GRHL2Q6ISB3 625 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 ERAP2Q6P179 960 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 ERICH5Q6P6B1 374 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 SERPINA13PQ6UXR4 307 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 TECPR1Q7Z6L1 1165 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 ERI1Q8IV48 349 aaKnown RBP14.28□□□□□ -0.12
USP4-203ENST00000415188 ZCCHC7Q8N3Z6 543 aaKnown RBP14.28□□□□□ -0.12
USP4-203ENST00000415188 FBXO15Q8NCQ5 510 aaPredicted RBP14.28□□□□□ -0.12
USP4-203ENST00000415188 OR5K1Q8NHB7 308 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 GLYATL1Q969I3 302 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 TMEM159Q96B96 161 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 TBC1D20Q96BZ9 403 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 FBXL20Q96IG2 436 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 CNDP2Q96KP4 475 aaKnown RBP14.28□□□□□ -0.12
USP4-203ENST00000415188 RBM4BQ9BQ04 359 aaKnown RBP14.28□□□□□ -0.12
USP4-203ENST00000415188 RBM4Q9BWF3 364 aaKnown RBP14.28□□□□□ -0.12
USP4-203ENST00000415188 SPATA9Q9BWV2 254 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 MKRN2Q9H000 416 aaKnown RBP14.28□□□□□ -0.12
USP4-203ENST00000415188 BRF2Q9HAW0 419 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 FAM120CQ9NX05 1096 aaKnown RBP14.28□□□□□ -0.12
USP4-203ENST00000415188 GPRC5BQ9NZH0 403 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 CD84Q9UIB8 345 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 RUVBL1Q9Y265 456 aaKnown RBP14.28□□□□□ -0.12
USP4-203ENST00000415188 SLC22A14Q9Y267 594 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 PCDHB14Q9Y5E9 798 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 AP1M2Q9Y6Q5 423 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 V9GYQ6 96 aa14.28□□□□□ -0.12
USP4-203ENST00000415188 EVPLLA8MZ36 301 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 H0YIV9 168 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 H3BSA7 217 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 TRMUO75648 421 aaKnown RBP14.27□□□□□ -0.12
USP4-203ENST00000415188 MYO1DO94832 1006 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 SNAP29O95721 258 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 ENGP17813 658 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 NELFEP18615 380 aaKnown RBP14.27□□□□□ -0.12
USP4-203ENST00000415188 MMP12P39900 470 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 KIR3DL1P43629 444 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 HLCSP50747 726 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 NOVA1P51513 510 aaKnown RBP14.27□□□□□ -0.12
USP4-203ENST00000415188 PHC1P78364 1004 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 STARD3Q14849 445 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 DUOXA1Q1HG43 343 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 RFX4Q33E94 735 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 PYCR3Q53H96 274 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 ARSIQ5FYB1 569 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 PEAR1Q5VY43 1037 aaPredicted RBP14.27□□□□□ -0.12
USP4-203ENST00000415188 NOXRED1Q6NXP6 359 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 SERPINA11Q86U17 422 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 STK32CQ86UX6 486 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 CACUL1Q86Y37 369 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 ZNF420Q8TAQ5 688 aaPredicted RBP14.27□□□□□ -0.12
USP4-203ENST00000415188 FBXO30Q8TB52 745 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 MTFMTQ96DP5 389 aaKnown RBP14.27□□□□□ -0.12
USP4-203ENST00000415188 HIC2Q96JB3 615 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 HSPA12BQ96MM6 686 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 FOPNLQ96NB1 174 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 TUBA1CQ9BQE3 449 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 CCM2Q9BSQ5 444 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 RIOK2Q9BVS4 552 aaKnown RBP14.27□□□□□ -0.12
USP4-203ENST00000415188 ABCG8Q9H221 673 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 IKZF5Q9H5V7 419 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 DDX18Q9NVP1 670 aaKnown RBP14.27□□□□□ -0.12
USP4-203ENST00000415188 PPT2Q9UMR5 302 aa14.27□□□□□ -0.12
USP4-203ENST00000415188 SLC5A10A0PJK1 596 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 ARHGEF33A8MVX0 844 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 G3V2T6 193 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 CLGNO14967 610 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 CST1P01037 141 aa14.26□□□□□ -0.13
USP4-203ENST00000415188 HLA-EP13747 358 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms