RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 LSM1O15116 133 aaKnown RBP13.63□□□□□ -0.23
SF3B1-204ENST00000414963 SRPX2O60687 465 aaPredicted RBP13.63□□□□□ -0.23
SF3B1-204ENST00000414963 PRAMEF10O60809 474 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 TBX6O95947 436 aaPredicted RBP13.63□□□□□ -0.23
SF3B1-204ENST00000414963 SERPINA6P08185 405 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 MSL3P1P0C860 447 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 PWP1Q13610 501 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 LSM12Q3MHD2 195 aaKnown RBP13.63□□□□□ -0.23
SF3B1-204ENST00000414963 ZC3H12BQ5HYM0 836 aaKnown RBP13.63□□□□□ -0.23
SF3B1-204ENST00000414963 MANEAQ5SRI9 462 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 DEPDC1Q5TB30 811 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 OGFOD2Q6N063 350 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 CHSY3Q70JA7 882 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 TMPRSS9Q7Z410 1059 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 ARHGAP22Q7Z5H3 698 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 VN1R4Q7Z5H5 301 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 GLRX5Q86SX6 157 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 PLD3Q8IV08 490 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 CCDC197Q8NCU1 140 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 NT5CQ8TCD5 201 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 TUBGCP3Q96CW5 907 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 CMTM7Q96FZ5 175 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 SLC41A2Q96JW4 573 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 ZNF285Q96NJ3 590 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 SERPINI1Q99574 410 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 MS4A8Q9BY19 250 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 ZNF768Q9H5H4 540 aaKnown RBP13.63□□□□□ -0.23
SF3B1-204ENST00000414963 FAM60AQ9NP50 221 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 SIRT5Q9NXA8 310 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 TMEM9Q9P0T7 183 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 VPS29Q9UBQ0 182 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 ZNF292O60281 2723 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 ASXL3Q9C0F0 2248 aa13.63□□□□□ -0.23
SF3B1-204ENST00000414963 IGHV5-10-1A0A0J9YXX1 117 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 ATP6AP2A0A1C7CYW4 349 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 CASC3O15234 703 aaKnown RBP13.62□□□□□ -0.23
SF3B1-204ENST00000414963 MAP3K7O43318 606 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 ATP6AP2O75787 350 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 SEMA3DO95025 777 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 THRAP10827 490 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 ACPPP15309 386 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 NELFEP18615 380 aaKnown RBP13.62□□□□□ -0.23
SF3B1-204ENST00000414963 GABRA4P48169 554 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 PPM1FP49593 454 aaPredicted RBP13.62□□□□□ -0.23
SF3B1-204ENST00000414963 ARFIP1P53367 373 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 RPS13P62277 151 aaKnown RBP13.62□□□□□ -0.23
SF3B1-204ENST00000414963 IRX1P78414 480 aaPredicted RBP13.62□□□□□ -0.23
SF3B1-204ENST00000414963 HSD11B2P80365 405 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 E2F1Q01094 437 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 HMGCS1Q01581 520 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 KIAA0040Q15053 153 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 IMPG1Q17R60 797 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 ADPRMQ3LIE5 342 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 TMEM35AQ53FP2 167 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 C6orf136Q5SQH8 315 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 SPATA19Q7Z5L4 167 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 MCATQ8IVS2 390 aaKnown RBP13.62□□□□□ -0.23
SF3B1-204ENST00000414963 PARP9Q8IXQ6 854 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 CACNA2D3Q8IZS8 1091 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 D2HGDHQ8N465 521 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 RNF175Q8N4F7 328 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 C11orf24Q96F05 449 aaPredicted RBP13.62□□□□□ -0.23
SF3B1-204ENST00000414963 PPP1R36Q96LQ0 422 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 RILPQ96NA2 401 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 GFM1Q96RP9 751 aaKnown RBP13.62□□□□□ -0.23
SF3B1-204ENST00000414963 HBEGFQ99075 208 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 PHOX2BQ99453 314 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 KLHL25Q9H0H3 589 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 SYNPO2LQ9H987 977 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 LRTM1Q9HBL6 345 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 PDE7BQ9NP56 450 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 C1orf109Q9NX04 203 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.62□□□□□ -0.23
SF3B1-204ENST00000414963 ATXN7L1Q9ULK2 861 aaPredicted RBP13.62□□□□□ -0.23
SF3B1-204ENST00000414963 PLCL2Q9UPR0 1127 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 PCDHGA1Q9Y5H4 931 aa13.62□□□□□ -0.23
SF3B1-204ENST00000414963 ASCC3Q8N3C0 2202 aaKnown RBP13.62□□□□□ -0.23
SF3B1-204ENST00000414963 HEATR5BQ9P2D3 2071 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 GOLGA8QA0A0J9YX86 632 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 GOLGA8OA6NCC3 632 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 LRIT2A6NDA9 550 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 D6RAR5 112 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 GOLGA8NF8WBI6 632 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 H0YGG7 62 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 RASSF9O75901 435 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 ETHE1O95571 254 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 TGFB1P01137 390 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 PCSK2P16519 638 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 LBPP18428 481 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 ARF3P61204 181 aaPredicted RBP13.61□□□□□ -0.23
SF3B1-204ENST00000414963 ERVK-8P63133 956 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 EMX2Q04743 252 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 ZFP36L1Q07352 338 aaKnown RBP13.61□□□□□ -0.23
SF3B1-204ENST00000414963 TBL3Q12788 808 aaKnown RBP13.61□□□□□ -0.23
SF3B1-204ENST00000414963 SF3A3Q12874 501 aaKnown RBP eCLIP13.61□□□□□ -0.23
SF3B1-204ENST00000414963 HYAL2Q12891 473 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 TRA2AQ13595 282 aaKnown RBP eCLIP13.61□□□□□ -0.231e-8■□□□□ 10.4
SF3B1-204ENST00000414963 DDX39BQ13838 428 aaKnown RBP13.61□□□□□ -0.23
SF3B1-204ENST00000414963 NR6A1Q15406 480 aa13.61□□□□□ -0.23
SF3B1-204ENST00000414963 AP5B1Q2VPB7 878 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms