RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 ENPP5Q9UJA9 477 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 GSK3BP49841 420 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 CDNFQ49AH0 187 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 GPRC5AQ8NFJ5 357 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 AZIN2Q96A70 460 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 TMED9Q9BVK6 235 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 TDRD3Q9H7E2 651 aaKnown RBP12.54□□□□□ -0.4
COL6A3-206ENST00000409809 GPRC5CQ9NQ84 441 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 MS4A12Q9NXJ0 267 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 HEBP2Q9Y5Z4 205 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 P2RX6O15547 441 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 PTPN9P43378 593 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 NTRK2Q16620 822 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 ARHGAP12Q8IWW6 846 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 OR6K6Q8NGW6 343 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 ADAMTS19Q8TE59 1207 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 UPF1Q92900 1129 aaKnown RBP eCLIP12.54□□□□□ -0.4
COL6A3-206ENST00000409809 BORCS7Q96B45 105 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.54□□□□□ -0.4
COL6A3-206ENST00000409809 CD300AQ9UGN4 299 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 MEGF6O75095 1541 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 TGOLN2O43493 480 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 HTR1AP08908 422 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 OGDHQ02218 1023 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 DUOXA1Q1HG43 343 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 ATG9BQ674R7 924 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 OR2T35Q8NGX2 323 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 SLC22A8Q8TCC7 542 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 ZDHHC12Q96GR4 267 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 MCMBPQ9BTE3 642 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 ITM2CQ9NQX7 267 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 PCDHB3Q9Y5E6 796 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 COLEC10Q9Y6Z7 277 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 CAPN5O15484 640 aaPredicted RBP12.54□□□□□ -0.4
COL6A3-206ENST00000409809 USP17L7P0C7H9 530 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 MC4RP32245 332 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 BMP8BP34820 402 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 NFKB2Q00653 900 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 BMP8AQ7Z5Y6 402 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 RETREG3Q86VR2 466 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 PLD5Q8N7P1 536 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 SIRPGQ9P1W8 387 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 FER1L6Q2WGJ9 1857 aa12.54□□□□□ -0.4
COL6A3-206ENST00000409809 PHYHO14832 338 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 LATO43561 262 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 CDH15P55291 814 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 NAE1Q13564 534 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 COTL1Q14019 142 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 DENND1AQ8TEH3 1009 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 SLC35G5Q96KT7 338 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 CACNG6Q9BXT2 260 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 NIPAL2Q9H841 368 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 CYP8B1Q9UNU6 501 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 ICKQ9UPZ9 632 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 NUP205Q92621 2012 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 E9PI62 339 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 PCDH8O95206 1070 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 EVI2BP34910 448 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 C1orf94Q6P1W5 598 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 ATP6V1C2Q8NEY4 427 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 SPIN2AQ99865 258 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 SPIN2BQ9BPZ2 258 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 KLHL9Q9P2J3 617 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 ZNF225Q9UK10 706 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 TNFSF13BQ9Y275 285 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 ADGRB1O14514 1584 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 NSG1P42857 185 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 YBEYP58557 167 aaPredicted RBP12.53□□□□□ -0.4
COL6A3-206ENST00000409809 GAD2Q05329 585 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 DSC3Q14574 896 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 XAGE5Q8WWM1 108 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 ZNF514Q96K75 400 aaPredicted RBP12.53□□□□□ -0.4
COL6A3-206ENST00000409809 CHRAC1Q9NRG0 131 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 AGO1Q9UL18 857 aaKnown RBP12.53□□□□□ -0.4
COL6A3-206ENST00000409809 CLDN4O14493 209 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 CKMT2P17540 419 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 MPIP34949 423 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 ZNF132P52740 706 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 KIAA1161Q6NSJ0 714 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 GAREM2Q75VX8 874 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 RIPOR3Q96MK2 946 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 NAALAD2Q9Y3Q0 740 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 RIMS1Q86UR5 1692 aaKnown RBP12.53□□□□□ -0.4
COL6A3-206ENST00000409809 AFF3P51826 1226 aaKnown RBP12.53□□□□□ -0.4
COL6A3-206ENST00000409809 HK3P52790 923 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 CXCR4P61073 352 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 CREB5Q02930 508 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 SEMA5AQ13591 1074 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 AQP11Q8NBQ7 271 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 AHCYL2Q96HN2 611 aaKnown RBP12.53□□□□□ -0.4
COL6A3-206ENST00000409809 LGMNQ99538 433 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 WASHC1A8K0Z3 465 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 WASH3PC4AMC7 463 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 SCGB1D2O95969 90 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 ITPKAP23677 461 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 TLDC1Q6P9B6 456 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 WASH2PQ6VEQ5 465 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 NRROSQ86YC3 692 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 SLC15A3Q8IY34 581 aa12.53□□□□□ -0.4
COL6A3-206ENST00000409809 RNF128Q8TEB7 428 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms