RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 MATN4O95460 622 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 TACR1P25103 407 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 SERPINA4P29622 427 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 IDUAP35475 653 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 ACLYP53396 1101 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 FOXM1Q08050 763 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 CPTPQ5TA50 214 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 TRAPPC5Q8IUR0 188 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 OR4A15Q8NGL6 344 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 CD99L2Q8TCZ2 262 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 CD200R1Q8TD46 325 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 SCLYQ96I15 445 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 Q96MT0 163 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 NLE1Q9NVX2 485 aaPredicted RBP11.57□□□□□ -0.56
HMGB1-206ENST00000405805 PAK1IP1Q9NWT1 392 aaPredicted RBP11.57□□□□□ -0.56
HMGB1-206ENST00000405805 PCDHB8Q9UN66 801 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 SCML2Q9UQR0 700 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 MANBAO00462 879 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 ALPLP05186 524 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 CSKP41240 450 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 RPS7P62081 194 aaKnown RBP11.57□□□□□ -0.56
HMGB1-206ENST00000405805 SCN1BQ07699 218 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 SVOPLQ8N434 492 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 TRPV1Q8NER1 839 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 ZNF382Q96SR6 550 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 CHIAQ9BZP6 476 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 IKZF5Q9H5V7 419 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 BRD9Q9H8M2 597 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 SGK2Q9HBY8 427 aa11.57□□□□□ -0.56
HMGB1-206ENST00000405805 NUFIP1Q9UHK0 495 aaKnown RBP11.57□□□□□ -0.56
HMGB1-206ENST00000405805 A0A1B0GVM2 712 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 H0YAE9 185 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 KPNA3O00505 521 aaPredicted RBP11.56□□□□□ -0.56
HMGB1-206ENST00000405805 AOC2O75106 756 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 GGT1P19440 569 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 DNAJB1P25685 340 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 HK3P52790 923 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 RPP38P78345 283 aaKnown RBP11.56□□□□□ -0.56
HMGB1-206ENST00000405805 RPA4Q13156 261 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 CDK5R2Q13319 367 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 CLCA4Q14CN2 919 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 TXNDC8Q6A555 127 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 FUT10Q6P4F1 479 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 C17orf99Q6UX52 265 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 TMPRSS11AQ6ZMR5 421 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 SLC22A17Q8WUG5 538 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 ZNF641Q96N77 438 aaPredicted RBP11.56□□□□□ -0.56
HMGB1-206ENST00000405805 MED28Q9H204 178 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 DLGAP4Q9Y2H0 992 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 STON1Q9Y6Q2 735 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 CACNA1CQ13936 2221 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 PDYNP01213 254 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 MAPKAPK2P49137 400 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 CTBSQ01459 385 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 SOWAHCQ53LP3 525 aaPredicted RBP11.56□□□□□ -0.56
HMGB1-206ENST00000405805 ZNF362Q5T0B9 420 aaPredicted RBP11.56□□□□□ -0.56
HMGB1-206ENST00000405805 DEDD2Q8WXF8 326 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 ZNF583Q96ND8 569 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 PKP4Q99569 1192 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 ZBTB20Q9HC78 741 aaPredicted RBP11.56□□□□□ -0.56
HMGB1-206ENST00000405805 ERVK13-1Q9NX77 482 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 KIF13BQ9NQT8 1826 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 PRAMEF33A0A0G2JMD5 474 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 SLC38A8A6NNN8 435 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 PRAMEF10O60809 474 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 STSP08842 583 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 DDCP20711 480 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 CDH4P55283 916 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 GALNT1Q10472 559 aaPredicted RBP11.56□□□□□ -0.56
HMGB1-206ENST00000405805 CFAP77Q6ZQR2 320 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 MYLIPQ8WY64 445 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 GTF2H4Q92759 462 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 CTRCQ99895 268 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 PPIL3Q9H2H8 161 aaKnown RBP11.56□□□□□ -0.56
HMGB1-206ENST00000405805 CRISPLD1Q9H336 500 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 SNX7Q9UNH6 387 aa11.56□□□□□ -0.56
HMGB1-206ENST00000405805 STX16O14662 325 aa11.55□□□□□ -0.56
HMGB1-206ENST00000405805 IGSF6O95976 241 aa11.55□□□□□ -0.56
HMGB1-206ENST00000405805 CKMT1AP12532 417 aa11.55□□□□□ -0.56
HMGB1-206ENST00000405805 PCDH1Q08174 1060 aa11.55□□□□□ -0.56
HMGB1-206ENST00000405805 FAM171BQ6P995 826 aa11.55□□□□□ -0.56
HMGB1-206ENST00000405805 CASP12Q6UXS9 341 aa11.55□□□□□ -0.56
HMGB1-206ENST00000405805 TSPAN33Q86UF1 283 aa11.55□□□□□ -0.56
HMGB1-206ENST00000405805 MRPS31Q92665 395 aaKnown RBP11.55□□□□□ -0.56
HMGB1-206ENST00000405805 KCNJ9Q92806 393 aa11.55□□□□□ -0.56
HMGB1-206ENST00000405805 SCAMP4Q969E2 229 aa11.55□□□□□ -0.56
HMGB1-206ENST00000405805 MYDGFQ969H8 173 aa11.55□□□□□ -0.56
HMGB1-206ENST00000405805 ZC3H10Q96K80 434 aaKnown RBP11.55□□□□□ -0.56
HMGB1-206ENST00000405805 REV1Q9UBZ9 1251 aa11.55□□□□□ -0.56
HMGB1-206ENST00000405805 FZD4Q9ULV1 537 aa11.55□□□□□ -0.56
HMGB1-206ENST00000405805 SLC22A1O15245 554 aa11.55□□□□□ -0.56
HMGB1-206ENST00000405805 CA12O43570 354 aa11.55□□□□□ -0.56
HMGB1-206ENST00000405805 PRAMEF12O95522 483 aa11.55□□□□□ -0.56
HMGB1-206ENST00000405805 TGFB1P01137 390 aa11.55□□□□□ -0.56
HMGB1-206ENST00000405805 STATHP02808 62 aa11.55□□□□□ -0.56
HMGB1-206ENST00000405805 TALDO1P37837 337 aa11.55□□□□□ -0.56
HMGB1-206ENST00000405805 OR3A3P47888 321 aa11.55□□□□□ -0.56
HMGB1-206ENST00000405805 MEF2AQ02078 507 aaPredicted RBP11.55□□□□□ -0.56
HMGB1-206ENST00000405805 IER5LQ5T953 404 aa11.55□□□□□ -0.56
HMGB1-206ENST00000405805 TNFAIP8L2Q6P589 184 aaPredicted RBP11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms