RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 TPD52L3Q96J77 140 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 OR52E6Q96RD3 313 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 ARNT2Q9HBZ2 717 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 PDE7BQ9NP56 450 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 TREX1Q9NSU2 369 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 SERTAD3Q9UJW9 196 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 A6NL46 340 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 YY2O15391 372 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 CD1DP15813 335 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 CDH2P19022 906 aaPredicted RBP9.93□□□□□ -0.82
COL6A3-205ENST00000392004 CLDN6P56747 220 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 RAPSNQ13702 412 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 ALG11Q2TAA5 492 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 VPS26BQ4G0F5 336 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 ZNF549Q6P9A3 640 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 TMEM184AQ6ZMB5 413 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 ZNF740Q8NDX6 193 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 OR5AK3PQ8NH89 298 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 GIPC3Q8TF64 312 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 ZDHHC12Q96GR4 267 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 ASPSCR1Q9BZE9 553 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 EXO5Q9H790 373 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 ZDHHC2Q9UIJ5 367 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 CNOT6Q9ULM6 557 aaKnown RBP9.93□□□□□ -0.82
COL6A3-205ENST00000392004 ZFR2Q9UPR6 939 aaKnown RBP9.93□□□□□ -0.82
COL6A3-205ENST00000392004 MRPS33Q9Y291 106 aaKnown RBP9.93□□□□□ -0.82
COL6A3-205ENST00000392004 ZNF780BQ9Y6R6 833 aa9.93□□□□□ -0.82
COL6A3-205ENST00000392004 NUP214P35658 2090 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-205ENST00000392004 RNF103-CHMP3A0A140T963 221 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 METTL12A8MUP2 240 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 MRASO14807 208 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 RPLP0P05388 317 aaKnown RBP9.92□□□□□ -0.82
COL6A3-205ENST00000392004 COL6A2P12110 1019 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 XRCC1P18887 633 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-205ENST00000392004 PRDX3P30048 256 aaKnown RBP9.92□□□□□ -0.82
COL6A3-205ENST00000392004 NTSP30990 170 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 CDK9P50750 372 aaKnown RBP9.92□□□□□ -0.82
COL6A3-205ENST00000392004 RAB28P51157 221 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 NOVA1P51513 510 aaKnown RBP9.92□□□□□ -0.82
COL6A3-205ENST00000392004 GPR18Q14330 331 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 PCLAFQ15004 111 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 GK5Q6ZS86 529 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 USP30Q70CQ3 517 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 CLVS1Q8IUQ0 354 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-205ENST00000392004 RP9Q8TA86 221 aaKnown RBP9.92□□□□□ -0.82
COL6A3-205ENST00000392004 RCN3Q96D15 328 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 PKP2Q99959 881 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 FAIM2Q9BWQ8 316 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 SLC6A14Q9UN76 642 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 IGHV1OR15-9A0A0B4J2B8 117 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 C2orf74A8MZ97 194 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 AREL1O15033 823 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 PRAMEF10O60809 474 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 JUNP05412 331 aaKnown RBP9.92□□□□□ -0.82
COL6A3-205ENST00000392004 GLULP15104 373 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 PCSK6P29122 969 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 SHMT2P34897 504 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 GSSP48637 474 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 CSNK1DP48730 415 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 AP1S2P56377 157 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 ERV3-1Q14264 604 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 KCNAB1Q14722 419 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 CCDC92Q53HC0 331 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-205ENST00000392004 TOR1AIP1Q5JTV8 583 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 CTSL3PQ5NE16 218 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 FRG2Q64ET8 278 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 DHRS13Q6UX07 377 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 HMGN2P46Q86SG4 172 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 GPR180Q86V85 440 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 SFRP1Q8N474 314 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 SMYD1Q8NB12 490 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 OR9I1Q8NGQ6 314 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 EID2BQ96D98 161 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 DNAJA3Q96EY1 480 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 FRG2BQ96QU4 278 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 NPAS2Q99743 824 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 OR8D2Q9GZM6 311 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 PCDHGA4Q9Y5G9 962 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 RBBP6Q7Z6E9 1792 aaKnown RBP9.92□□□□□ -0.82
COL6A3-205ENST00000392004 E7EQ34 232 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 POLR1CO15160 346 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-205ENST00000392004 GREM1O60565 184 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 AP2A2O94973 939 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 CER1O95813 267 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 CCNA2P20248 432 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 DUSP3P51452 185 aaPredicted RBP9.92□□□□□ -0.82
COL6A3-205ENST00000392004 HERVK_113P63132 956 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 STX5Q13190 355 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 DOC2AQ14183 400 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 GK3PQ14409 553 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 IHHQ14623 411 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 NDUFA9Q16795 377 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 PLEKHS1Q5SXH7 462 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 C16orf87Q6PH81 154 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 ISCA2Q86U28 154 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 SPPL2AQ8TCT8 520 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 RSC1A1Q92681 617 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 SORBS1Q9BX66 1292 aaKnown RBP9.92□□□□□ -0.82
COL6A3-205ENST00000392004 OSBPL11Q9BXB4 747 aa9.92□□□□□ -0.82
COL6A3-205ENST00000392004 ERVK-6Q9BXR3 956 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms