RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 C1orf52Q8N6N3 182 aaKnown RBP20.74■□□□□ 0.91
TRIM54-202ENST00000380075 OR2L2Q8NH16 312 aa20.74■□□□□ 0.91
TRIM54-202ENST00000380075 DDX18Q9NVP1 670 aaKnown RBP20.74■□□□□ 0.91
TRIM54-202ENST00000380075 IFT80Q9P2H3 777 aaPredicted RBP20.74■□□□□ 0.91
TRIM54-202ENST00000380075 WNT16Q9UBV4 365 aa20.74■□□□□ 0.91
TRIM54-202ENST00000380075 FBXL21Q9UKT6 434 aa20.74■□□□□ 0.91
TRIM54-202ENST00000380075 PCDHB11Q9Y5F2 797 aa20.74■□□□□ 0.91
TRIM54-202ENST00000380075 TIA1P31483 386 aaKnown RBP eCLIP20.74■□□□□ 0.91
TRIM54-202ENST00000380075 HLCSP50747 726 aa20.74■□□□□ 0.91
TRIM54-202ENST00000380075 RAE1P78406 368 aaKnown RBP20.74■□□□□ 0.91
TRIM54-202ENST00000380075 HIST2H2ACQ16777 129 aaPredicted RBP20.74■□□□□ 0.91
TRIM54-202ENST00000380075 TMEM259Q4ZIN3 620 aa20.74■□□□□ 0.91
TRIM54-202ENST00000380075 CPTPQ5TA50 214 aa20.74■□□□□ 0.91
TRIM54-202ENST00000380075 HIST2H2AA3Q6FI13 130 aa20.74■□□□□ 0.91
TRIM54-202ENST00000380075 UNC5DQ6UXZ4 953 aa20.74■□□□□ 0.91
TRIM54-202ENST00000380075 ZNF621Q6ZSS3 439 aa20.74■□□□□ 0.91
TRIM54-202ENST00000380075 LPCAT2Q7L5N7 544 aa20.74■□□□□ 0.91
TRIM54-202ENST00000380075 LAS2Q8IYD9 372 aa20.74■□□□□ 0.91
TRIM54-202ENST00000380075 TERB1Q8NA31 727 aa20.74■□□□□ 0.91
TRIM54-202ENST00000380075 ZNF555Q8NEP9 628 aa20.74■□□□□ 0.91
TRIM54-202ENST00000380075 COQ8BQ96D53 544 aa20.74■□□□□ 0.91
TRIM54-202ENST00000380075 HDAC8Q9BY41 377 aa20.74■□□□□ 0.91
TRIM54-202ENST00000380075 ATXN10Q9UBB4 475 aa20.74■□□□□ 0.91
TRIM54-202ENST00000380075 C3orf18Q9UK00 162 aa20.74■□□□□ 0.91
TRIM54-202ENST00000380075 KRBA1A5PL33 1030 aa20.73■□□□□ 0.91
TRIM54-202ENST00000380075 B3GALT4O96024 378 aa20.73■□□□□ 0.91
TRIM54-202ENST00000380075 C1GALT1C1LP0DN25 315 aa20.73■□□□□ 0.91
TRIM54-202ENST00000380075 CTHP32929 405 aa20.73■□□□□ 0.91
TRIM54-202ENST00000380075 MESP2Q0VG99 397 aa20.73■□□□□ 0.91
TRIM54-202ENST00000380075 VEZF1Q14119 521 aa20.73■□□□□ 0.91
TRIM54-202ENST00000380075 ZZZ3Q8IYH5 903 aa20.73■□□□□ 0.91
TRIM54-202ENST00000380075 CXorf40AQ8TE69 158 aa20.73■□□□□ 0.91
TRIM54-202ENST00000380075 MGAT4DA6NG13 374 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 SHISA7A6NL88 538 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 K7ESM1 405 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 MMP20O60882 483 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 KCNK5O95279 499 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 NPPBP16860 134 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 CD72P21854 359 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 RPL3P39023 403 aaKnown RBP20.72■□□□□ 0.91
TRIM54-202ENST00000380075 DCTP40126 519 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 RPA4Q13156 261 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 MLF2Q15773 248 aaPredicted RBP20.72■□□□□ 0.91
TRIM54-202ENST00000380075 ZCCHC8Q6NZY4 707 aaKnown RBP20.72■□□□□ 0.91
TRIM54-202ENST00000380075 ZNF551Q7Z340 670 aaPredicted RBP20.72■□□□□ 0.91
TRIM54-202ENST00000380075 TRMT11Q7Z4G4 463 aaKnown RBP20.72■□□□□ 0.91
TRIM54-202ENST00000380075 THAP5Q7Z6K1 395 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 TRIM74Q86UV6 250 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 C8orf59Q8N0T1 100 aaPredicted RBP20.72■□□□□ 0.91
TRIM54-202ENST00000380075 SETD7Q8WTS6 366 aaKnown RBP20.72■□□□□ 0.91
TRIM54-202ENST00000380075 UBE2E3Q969T4 207 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 MUS81Q96NY9 551 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 TOR3AQ9H497 397 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 TSC22D4Q9Y3Q8 395 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 CROCCQ5TZA2 2017 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 COL4A3Q01955 1670 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 TICRRQ7Z2Z1 1910 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 E2F6O75461 281 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 POP7O75817 140 aaKnown RBP20.72■□□□□ 0.91
TRIM54-202ENST00000380075 ETHE1O95571 254 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 LAMP1P11279 417 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 OPRD1P41143 372 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 RPS13P62277 151 aaKnown RBP20.72■□□□□ 0.91
TRIM54-202ENST00000380075 PHEXP78562 749 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 SLC14A1Q13336 389 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 ZC3H12BQ5HYM0 836 aaKnown RBP20.72■□□□□ 0.91
TRIM54-202ENST00000380075 RBM48Q5RL73 367 aaKnown RBP20.72■□□□□ 0.91
TRIM54-202ENST00000380075 SPESP1Q6UW49 350 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 ZDHHC21Q8IVQ6 265 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 SIX5Q8N196 739 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 EDAQ92838 391 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 TMIGD2Q96BF3 282 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 HIC2Q96JB3 615 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 ING2Q9H160 280 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 C8orf33Q9H7E9 229 aaPredicted RBP20.72■□□□□ 0.91
TRIM54-202ENST00000380075 FAM118AQ9NWS6 357 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 ATP6V1HQ9UI12 483 aa20.72■□□□□ 0.91
TRIM54-202ENST00000380075 GABRR3A8MPY1 467 aa20.71■□□□□ 0.91
TRIM54-202ENST00000380075 RNASET2O00584 256 aaKnown RBP20.71■□□□□ 0.91
TRIM54-202ENST00000380075 PI15O43692 258 aa20.71■□□□□ 0.91
TRIM54-202ENST00000380075 PCDH7O60245 1069 aa20.71■□□□□ 0.91
TRIM54-202ENST00000380075 ZNF8P17098 575 aaPredicted RBP20.71■□□□□ 0.91
TRIM54-202ENST00000380075 ACADLP28330 430 aa20.71■□□□□ 0.91
TRIM54-202ENST00000380075 RAD23AP54725 363 aa20.71■□□□□ 0.91
TRIM54-202ENST00000380075 ZIK1Q3SY52 487 aaPredicted RBP20.71■□□□□ 0.91
TRIM54-202ENST00000380075 XKR5Q6UX68 686 aa20.71■□□□□ 0.91
TRIM54-202ENST00000380075 ERI1Q8IV48 349 aaKnown RBP20.71■□□□□ 0.91
TRIM54-202ENST00000380075 ZNF547Q8IVP9 402 aa20.71■□□□□ 0.91
TRIM54-202ENST00000380075 LRRC56Q8IYG6 542 aaPredicted RBP20.71■□□□□ 0.91
TRIM54-202ENST00000380075 CDC26Q8NHZ8 85 aa20.71■□□□□ 0.91
TRIM54-202ENST00000380075 COL25A1Q9BXS0 654 aaPredicted RBP20.71■□□□□ 0.91
TRIM54-202ENST00000380075 BHLHE41Q9C0J9 482 aaPredicted RBP20.71■□□□□ 0.91
TRIM54-202ENST00000380075 SOX17Q9H6I2 414 aaPredicted RBP20.71■□□□□ 0.91
TRIM54-202ENST00000380075 TPT1P8Q9HAU6 139 aa20.71■□□□□ 0.91
TRIM54-202ENST00000380075 IL1RAPQ9NPH3 570 aa20.71■□□□□ 0.91
TRIM54-202ENST00000380075 CCDC177Q9NQR7 707 aaPredicted RBP20.71■□□□□ 0.91
TRIM54-202ENST00000380075 CIDEBQ9UHD4 219 aa20.71■□□□□ 0.91
TRIM54-202ENST00000380075 ORC6Q9Y5N6 252 aa20.71■□□□□ 0.91
TRIM54-202ENST00000380075 MAGED1Q9Y5V3 778 aaPredicted RBP20.71■□□□□ 0.91
TRIM54-202ENST00000380075 COL4A2P08572 1712 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms