RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 ASPDHA6ND91 283 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 PROB1E7EW31 1015 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 KHNYNO15037 678 aaKnown RBP13.78□□□□□ -0.2
HMGA1-203ENST00000374116 TAPBPO15533 448 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 ATE1O95260 518 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 ENGP17813 658 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 ATP6V1B2P21281 511 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 RABIFP47224 123 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 HSPA7P48741 367 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 NXPH1P58417 271 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 TRAF3Q13114 568 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 PRKG2Q13237 762 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 CAPRIN1Q14444 709 aaKnown RBP13.78□□□□□ -0.2
HMGA1-203ENST00000374116 TEAD4Q15561 434 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 ZNF765Q7L2R6 523 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 NANOGNBQ7Z5D8 188 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 SFRP1Q8N474 314 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 VPS33AQ96AX1 596 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 PDXPQ96GD0 296 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 CCDC138Q96M89 665 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 COPS8Q99627 209 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 EGFL8Q99944 293 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 TUBA1CQ9BQE3 449 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 ZSCAN5AQ9BUG6 496 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 TEX101Q9BY14 249 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 CD244Q9BZW8 370 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 FGF22Q9HCT0 170 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 TSR3Q9UJK0 312 aaKnown RBP13.78□□□□□ -0.2
HMGA1-203ENST00000374116 SLC6A14Q9UN76 642 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 ANGPTL3Q9Y5C1 460 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 SNX13Q9Y5W8 968 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 PIKFYVEQ9Y2I7 2098 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 DMXL1Q9Y485 3027 aa13.78□□□□□ -0.2
HMGA1-203ENST00000374116 CABIN1Q9Y6J0 2220 aa13.77□□□□□ -0.2
HMGA1-203ENST00000374116 SPTY2D1-AS1A0A0U1RR47 76 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 ZNF839A8K0R7 811 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 EIF3FO00303 357 aaPredicted RBP13.77□□□□□ -0.21
HMGA1-203ENST00000374116 CACNB4O00305 520 aaPredicted RBP13.77□□□□□ -0.21
HMGA1-203ENST00000374116 KPNA4O00629 521 aaPredicted RBP13.77□□□□□ -0.21
HMGA1-203ENST00000374116 LSM1O15116 133 aaKnown RBP13.77□□□□□ -0.21
HMGA1-203ENST00000374116 GUCA1CO95843 209 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 BMP2P12643 396 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 TGM1P22735 817 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 EEFSECP57772 596 aaKnown RBP13.77□□□□□ -0.21
HMGA1-203ENST00000374116 NFATC4Q14934 902 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 OXA1LQ15070 435 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 SMU1Q2TAY7 513 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 HLA-BQ31612 363 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 NHSL2Q5HYW2 709 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 CDKL4Q5MAI5 379 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 TTC23LQ6PF05 361 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 C16orf87Q6PH81 154 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 DET1Q7L5Y6 550 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 ZFAND4Q86XD8 727 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 DCBLD1Q8N8Z6 715 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 ANKFN1Q8N957 763 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 CEP76Q8TAP6 659 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 PROKR1Q8TCW9 393 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 BTN2A2Q8WVV5 523 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 GLYATL1Q969I3 302 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 RHBDF1Q96CC6 855 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 DHRS1Q96LJ7 313 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 PPP3R2Q96LZ3 170 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 CTRCQ99895 268 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 TMEM79Q9BSE2 394 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 OR2AG1Q9H205 316 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 SEMA6AQ9H2E6 1030 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 COQ10BQ9H8M1 238 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 PHPT1Q9NRX4 125 aaPredicted RBP13.77□□□□□ -0.21
HMGA1-203ENST00000374116 WWOXQ9NZC7 414 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 OPTCQ9UBM4 332 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 PCDH15Q96QU1 1955 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 PIEZO1Q92508 2521 aa13.77□□□□□ -0.21
HMGA1-203ENST00000374116 ARHGAP33O14559 1287 aa13.76□□□□□ -0.21
HMGA1-203ENST00000374116 KATNA1O75449 491 aa13.76□□□□□ -0.21
HMGA1-203ENST00000374116 ZNF806P0C7X5 589 aa13.76□□□□□ -0.21
HMGA1-203ENST00000374116 MYCLP1P12525 358 aaPredicted RBP13.76□□□□□ -0.21
HMGA1-203ENST00000374116 IL10P22301 178 aa13.76□□□□□ -0.21
HMGA1-203ENST00000374116 MYF6P23409 242 aa13.76□□□□□ -0.21
HMGA1-203ENST00000374116 IL12AP29459 219 aa13.76□□□□□ -0.21
HMGA1-203ENST00000374116 CTSKP43235 329 aa13.76□□□□□ -0.21
HMGA1-203ENST00000374116 PIK3CGP48736 1102 aa13.76□□□□□ -0.21
HMGA1-203ENST00000374116 HTR6P50406 440 aa13.76□□□□□ -0.21
HMGA1-203ENST00000374116 HNRNPFP52597 415 aaKnown RBP13.76□□□□□ -0.21
HMGA1-203ENST00000374116 EIF2B5Q13144 721 aaKnown RBP13.76□□□□□ -0.21
HMGA1-203ENST00000374116 C1orf61Q13536 156 aa13.76□□□□□ -0.21
HMGA1-203ENST00000374116 NR6A1Q15406 480 aa13.76□□□□□ -0.21
HMGA1-203ENST00000374116 PHKG1Q16816 387 aa13.76□□□□□ -0.21
HMGA1-203ENST00000374116 PAGE3Q5JUK9 113 aa13.76□□□□□ -0.21
HMGA1-203ENST00000374116 ANKRD26P1Q6NSI1 321 aa13.76□□□□□ -0.21
HMGA1-203ENST00000374116 PPP4R4Q6NUP7 873 aa13.76□□□□□ -0.21
HMGA1-203ENST00000374116 ADAMTSL4Q6UY14 1074 aa13.76□□□□□ -0.21
HMGA1-203ENST00000374116 ERMP1Q7Z2K6 904 aa13.76□□□□□ -0.21
HMGA1-203ENST00000374116 PTRH1Q86Y79 214 aaKnown RBP13.76□□□□□ -0.21
HMGA1-203ENST00000374116 HID1Q8IV36 788 aa13.76□□□□□ -0.21
HMGA1-203ENST00000374116 DPP10Q8N608 796 aa13.76□□□□□ -0.21
HMGA1-203ENST00000374116 CANT1Q8WVQ1 401 aa13.76□□□□□ -0.21
HMGA1-203ENST00000374116 OR1E3Q8WZA6 343 aa13.76□□□□□ -0.21
HMGA1-203ENST00000374116 TFAP2CQ92754 450 aa13.76□□□□□ -0.21
HMGA1-203ENST00000374116 PPWD1Q96BP3 646 aaKnown RBP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms