RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 SIPA1L3O60292 1781 aaPredicted RBP14.41□□□□□ -0.1
COL17A1-201ENST00000353479 ZCWPW2A0A1B0GU75 182 aa14.41□□□□□ -0.1
COL17A1-201ENST00000353479 PCDHGA12O60330 932 aa14.41□□□□□ -0.1
COL17A1-201ENST00000353479 DENND1AQ8TEH3 1009 aa14.41□□□□□ -0.1
COL17A1-201ENST00000353479 CANT1Q8WVQ1 401 aa14.41□□□□□ -0.1
COL17A1-201ENST00000353479 DPH7Q9BTV6 452 aa14.41□□□□□ -0.1
COL17A1-201ENST00000353479 SUSD2Q9UGT4 822 aa14.41□□□□□ -0.1
COL17A1-201ENST00000353479 TRBC2A0A5B9 178 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 WASH4PA8MWX3 477 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 SDC3O75056 442 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 TMCC2O75069 709 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 SOX9P48436 509 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 MPP2Q14168 576 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 LASP1Q14847 261 aaKnown RBP14.4□□□□□ -0.1
COL17A1-201ENST00000353479 RABL3Q5HYI8 236 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 NOXRED1Q6NXP6 359 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 POLR2J3Q9H1A7 115 aaKnown RBP14.4□□□□□ -0.1
COL17A1-201ENST00000353479 LYARQ9NX58 379 aaKnown RBP14.4□□□□□ -0.1
COL17A1-201ENST00000353479 HSFX1Q9UBD0 423 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 MYOGP15173 224 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 AOC1P19801 751 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 ECHS1P30084 290 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 SLC7A1P30825 629 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 NUP62P37198 522 aaPredicted RBP14.4□□□□□ -0.1
COL17A1-201ENST00000353479 PXNP49023 591 aaPredicted RBP14.4□□□□□ -0.1
COL17A1-201ENST00000353479 HNRNPA1L2Q32P51 320 aaKnown RBP14.4□□□□□ -0.1
COL17A1-201ENST00000353479 KDELC1Q6UW63 502 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 RTL10Q7L3V2 364 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 TMEM173Q86WV6 379 aaPredicted RBP14.4□□□□□ -0.1
COL17A1-201ENST00000353479 TMEM156Q8N614 296 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 IL26Q9NPH9 171 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 MYH10P35580 1976 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 FEZF1A0PJY2 475 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 TNFRSF10BO14763 440 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 KHNYNO15037 678 aaKnown RBP14.4□□□□□ -0.1
COL17A1-201ENST00000353479 CYP17A1P05093 508 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 MATN1P21941 496 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 DUSP3P51452 185 aaPredicted RBP14.4□□□□□ -0.1
COL17A1-201ENST00000353479 OLR1P78380 273 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 COL9A2Q14055 689 aaPredicted RBP14.4□□□□□ -0.1
COL17A1-201ENST00000353479 RTN4RL1Q86UN2 441 aaPredicted RBP14.4□□□□□ -0.1
COL17A1-201ENST00000353479 GHDCQ8N2G8 530 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 CAMK1GQ96NX5 476 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 M0QX08 132 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 SCDO00767 359 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 AQP4P55087 323 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 MPP7Q5T2T1 576 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 OR10G2Q8NGC3 310 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 OR10Q1Q8NGQ4 319 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 OR8D2Q9GZM6 311 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 NCDNQ9UBB6 729 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 PTGDR2Q9Y5Y4 395 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 MPZL2O60487 215 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 CXCR1P25024 350 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 GRIN2CQ14957 1233 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 CXorf57Q6NSI4 855 aaKnown RBP14.4□□□□□ -0.1
COL17A1-201ENST00000353479 RNF130Q86XS8 419 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 ZZZ3Q8IYH5 903 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 REEP4Q9H6H4 257 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 CMTM6Q9NX76 183 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 GIN1Q9NXP7 522 aa14.4□□□□□ -0.1
COL17A1-201ENST00000353479 PEX12O00623 359 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 CASKO14936 926 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 MUSKO15146 869 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 GSTT1P30711 240 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 FAM214AQ32MH5 1076 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 FAM78AQ5JUQ0 283 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 USP53Q70EK8 1073 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 GEMIN6Q8WXD5 167 aaKnown RBP14.39□□□□□ -0.11
COL17A1-201ENST00000353479 PALMDQ9NP74 551 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 KLRF1Q9NZS2 232 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 HOXD8P13378 290 aaPredicted RBP14.39□□□□□ -0.11
COL17A1-201ENST00000353479 RCVRNP35243 200 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 CAPGP40121 348 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 GALK1P51570 392 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 ITGADQ13349 1161 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 DOC2AQ14183 400 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 ZNF267Q14586 743 aaPredicted RBP14.39□□□□□ -0.11
COL17A1-201ENST00000353479 PTGR1Q14914 329 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 DECR1Q16698 335 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 C18orf21Q32NC0 220 aaPredicted RBP14.39□□□□□ -0.11
COL17A1-201ENST00000353479 TRNP1Q6NT89 227 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 LINC01465Q8N7H1 131 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 MDGA1Q8NFP4 955 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 UBASH3BQ8TF42 649 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 FOXJ1Q92949 421 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 RFKQ969G6 155 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 HHIPQ96QV1 700 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 COQ7Q99807 217 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 GRB7Q14451 532 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 PTGES3Q15185 160 aaKnown RBP14.39□□□□□ -0.11
COL17A1-201ENST00000353479 MYLIPQ8WY64 445 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 MCM8Q9UJA3 840 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 SCML1Q9UN30 329 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 CITO14578 2027 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 MYH15Q9Y2K3 1946 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 A0A1B0GW55 424 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 CHST10O43529 356 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 DUX1O43812 170 aa14.39□□□□□ -0.11
COL17A1-201ENST00000353479 DUX4L2P0CJ85 424 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms