RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 CCDC159P0C7I6 412 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 ADH5P11766 374 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 CLK3P49761 638 aaKnown RBP20.98■□□□□ 0.95
SHMT1-202ENST00000352886 E2F2Q14209 437 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 ZNF658BQ4V348 819 aaPredicted RBP20.98■□□□□ 0.95
SHMT1-202ENST00000352886 ANXA8L1Q5VT79 327 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 XKR5Q6UX68 686 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 CROCCP3Q8IVE0 287 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 SETD9Q8NE22 299 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 ZFP90Q8TF47 636 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 TANKQ92844 425 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 COQ8BQ96D53 544 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 CSF3RQ99062 836 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 OR2AG1Q9H205 316 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 CXXC1Q9P0U4 656 aaPredicted RBP20.98■□□□□ 0.95
SHMT1-202ENST00000352886 XYLBO75191 536 aa20.97■□□□□ 0.95
SHMT1-202ENST00000352886 ABCB1P08183 1280 aaPredicted RBP20.97■□□□□ 0.95
SHMT1-202ENST00000352886 AQP1P29972 269 aa20.97■□□□□ 0.95
SHMT1-202ENST00000352886 STARD3Q14849 445 aa20.97■□□□□ 0.95
SHMT1-202ENST00000352886 RGNQ15493 299 aa20.97■□□□□ 0.95
SHMT1-202ENST00000352886 CPA6Q8N4T0 437 aa20.97■□□□□ 0.95
SHMT1-202ENST00000352886 OR4A15Q8NGL6 344 aa20.97■□□□□ 0.95
SHMT1-202ENST00000352886 MUL1Q969V5 352 aa20.97■□□□□ 0.95
SHMT1-202ENST00000352886 MYOCQ99972 504 aa20.97■□□□□ 0.95
SHMT1-202ENST00000352886 MAPRE3Q9UPY8 281 aa20.97■□□□□ 0.95
SHMT1-202ENST00000352886 NAALAD2Q9Y3Q0 740 aa20.97■□□□□ 0.95
SHMT1-202ENST00000352886 SOBPA7XYQ1 873 aa20.97■□□□□ 0.95
SHMT1-202ENST00000352886 GBAP04062 536 aa20.97■□□□□ 0.95
SHMT1-202ENST00000352886 NPPBP16860 134 aa20.97■□□□□ 0.95
SHMT1-202ENST00000352886 CRYBA2P53672 197 aa20.97■□□□□ 0.95
SHMT1-202ENST00000352886 MESP2Q0VG99 397 aa20.97■□□□□ 0.95
SHMT1-202ENST00000352886 DDX59Q5T1V6 619 aaKnown RBP eCLIP20.97■□□□□ 0.95
SHMT1-202ENST00000352886 ZNF566Q969W8 418 aa20.97■□□□□ 0.95
SHMT1-202ENST00000352886 REPS1Q96D71 796 aa20.97■□□□□ 0.95
SHMT1-202ENST00000352886 SPATA9Q9BWV2 254 aa20.97■□□□□ 0.95
SHMT1-202ENST00000352886 EPHX3Q9H6B9 360 aa20.97■□□□□ 0.95
SHMT1-202ENST00000352886 REEP1Q9H902 201 aa20.97■□□□□ 0.95
SHMT1-202ENST00000352886 GPN2Q9H9Y4 310 aaPredicted RBP20.97■□□□□ 0.95
SHMT1-202ENST00000352886 GALNT8Q9NY28 637 aa20.97■□□□□ 0.95
SHMT1-202ENST00000352886 KIF17Q9P2E2 1029 aa20.97■□□□□ 0.95
SHMT1-202ENST00000352886 AASSQ9UDR5 926 aa20.97■□□□□ 0.95
SHMT1-202ENST00000352886 VPS4AQ9UN37 437 aa20.97■□□□□ 0.95
SHMT1-202ENST00000352886 CORO2BQ9UQ03 480 aa20.97■□□□□ 0.95
SHMT1-202ENST00000352886 EXO1Q9UQ84 846 aaKnown RBP20.97■□□□□ 0.95
SHMT1-202ENST00000352886 LILRB5O75023 590 aa20.96■□□□□ 0.95
SHMT1-202ENST00000352886 PCMT1P22061 227 aa20.96■□□□□ 0.95
SHMT1-202ENST00000352886 PPIBP23284 216 aaKnown RBP20.96■□□□□ 0.95
SHMT1-202ENST00000352886 VASPP50552 380 aaPredicted RBP20.96■□□□□ 0.95
SHMT1-202ENST00000352886 ITGA1P56199 1179 aa20.96■□□□□ 0.95
SHMT1-202ENST00000352886 KEAP1Q14145 624 aa20.96■□□□□ 0.95
SHMT1-202ENST00000352886 ZBTB46Q86UZ6 589 aa20.96■□□□□ 0.95
SHMT1-202ENST00000352886 FUNDC2Q9BWH2 189 aa20.96■□□□□ 0.95
SHMT1-202ENST00000352886 PSME2Q9UL46 239 aa20.96■□□□□ 0.95
SHMT1-202ENST00000352886 ZNF197O14709 1029 aa20.96■□□□□ 0.95
SHMT1-202ENST00000352886 FMO3P31513 532 aa20.96■□□□□ 0.95
SHMT1-202ENST00000352886 IRS1P35568 1242 aa20.96■□□□□ 0.95
SHMT1-202ENST00000352886 BMPR1AP36894 532 aa20.96■□□□□ 0.95
SHMT1-202ENST00000352886 SLBPQ14493 270 aaKnown RBP eCLIP20.96■□□□□ 0.95
SHMT1-202ENST00000352886 BCL7AQ4VC05 210 aa20.96■□□□□ 0.95
SHMT1-202ENST00000352886 ZNF385BQ569K4 471 aa20.96■□□□□ 0.95
SHMT1-202ENST00000352886 RAET1GQ6H3X3 334 aa20.96■□□□□ 0.95
SHMT1-202ENST00000352886 ANGPTL8Q6UXH0 198 aa20.96■□□□□ 0.95
SHMT1-202ENST00000352886 RTL10Q7L3V2 364 aa20.96■□□□□ 0.95
SHMT1-202ENST00000352886 B3GNT8Q7Z7M8 397 aa20.96■□□□□ 0.95
SHMT1-202ENST00000352886 NAGSQ8N159 534 aa20.96■□□□□ 0.95
SHMT1-202ENST00000352886 FBXO15Q8NCQ5 510 aaPredicted RBP20.96■□□□□ 0.95
SHMT1-202ENST00000352886 OR4K1Q8NGD4 311 aa20.96■□□□□ 0.95
SHMT1-202ENST00000352886 SPPL3Q8TCT6 385 aa20.96■□□□□ 0.95
SHMT1-202ENST00000352886 NXPE3Q969Y0 559 aa20.96■□□□□ 0.95
SHMT1-202ENST00000352886 THUMPD1Q9NXG2 353 aaKnown RBP20.96■□□□□ 0.95
SHMT1-202ENST00000352886 DYRK1BQ9Y463 629 aa20.96■□□□□ 0.95
SHMT1-202ENST00000352886 GMPPBQ9Y5P6 360 aa20.96■□□□□ 0.95
SHMT1-202ENST00000352886 KIAA0100Q14667 2235 aaKnown RBP20.95■□□□□ 0.95
SHMT1-202ENST00000352886 SAP18O00422 153 aaKnown RBP20.95■□□□□ 0.94
SHMT1-202ENST00000352886 RNASET2O00584 256 aaKnown RBP20.95■□□□□ 0.94
SHMT1-202ENST00000352886 JRKO75564 520 aa20.95■□□□□ 0.94
SHMT1-202ENST00000352886 INMTO95050 263 aa20.95■□□□□ 0.94
SHMT1-202ENST00000352886 BCL10O95999 233 aa20.95■□□□□ 0.94
SHMT1-202ENST00000352886 PRNPP04156 253 aa20.95■□□□□ 0.94
SHMT1-202ENST00000352886 HLA-EP13747 358 aa20.95■□□□□ 0.94
SHMT1-202ENST00000352886 ITIH1P19827 911 aa20.95■□□□□ 0.94
SHMT1-202ENST00000352886 HOXA9P31269 272 aa20.95■□□□□ 0.94
SHMT1-202ENST00000352886 ZNF763Q0D2J5 394 aa20.95■□□□□ 0.94
SHMT1-202ENST00000352886 TMED1Q13445 227 aa20.95■□□□□ 0.94
SHMT1-202ENST00000352886 GALNT18Q6P9A2 607 aa20.95■□□□□ 0.94
SHMT1-202ENST00000352886 PIWIL3Q7Z3Z3 882 aaKnown RBP20.95■□□□□ 0.94
SHMT1-202ENST00000352886 TTC29Q8NA56 475 aaPredicted RBP20.95■□□□□ 0.94
SHMT1-202ENST00000352886 ATG16L2Q8NAA4 619 aa20.95■□□□□ 0.94
SHMT1-202ENST00000352886 FKBP10Q96AY3 582 aa20.95■□□□□ 0.94
SHMT1-202ENST00000352886 NUS1Q96E22 293 aa20.95■□□□□ 0.94
SHMT1-202ENST00000352886 ZCCHC2Q9C0B9 1178 aaKnown RBP20.95■□□□□ 0.94
SHMT1-202ENST00000352886 ZNF282Q9UDV7 671 aaPredicted RBP20.95■□□□□ 0.94
SHMT1-202ENST00000352886 RAPGEFL1Q9UHV5 662 aa20.95■□□□□ 0.94
SHMT1-202ENST00000352886 M0QX08 132 aa20.95■□□□□ 0.94
SHMT1-202ENST00000352886 PLK4O00444 970 aa20.95■□□□□ 0.94
SHMT1-202ENST00000352886 HTR1BP28222 390 aa20.95■□□□□ 0.94
SHMT1-202ENST00000352886 PNLIPRP1P54315 467 aa20.95■□□□□ 0.94
SHMT1-202ENST00000352886 TRMT11Q7Z4G4 463 aaKnown RBP20.95■□□□□ 0.94
SHMT1-202ENST00000352886 WFIKKN2Q8TEU8 576 aa20.95■□□□□ 0.94
SHMT1-202ENST00000352886 KRT84Q9NSB2 600 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms