RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 UBTD2Q8WUN7 234 aa18.25■□□□□ 0.51
SYNE4-202ENST00000340477 MIEF2Q96C03 454 aa18.25■□□□□ 0.51
SYNE4-202ENST00000340477 BBC3Q96PG8 261 aaPredicted RBP18.25■□□□□ 0.51
SYNE4-202ENST00000340477 CD244Q9BZW8 370 aa18.25■□□□□ 0.51
SYNE4-202ENST00000340477 PITHD1Q9GZP4 211 aaPredicted RBP18.25■□□□□ 0.51
SYNE4-202ENST00000340477 PPCSQ9HAB8 311 aa18.25■□□□□ 0.51
SYNE4-202ENST00000340477 ACSS2Q9NR19 701 aa18.25■□□□□ 0.51
SYNE4-202ENST00000340477 SLC22A11Q9NSA0 550 aa18.25■□□□□ 0.51
SYNE4-202ENST00000340477 C14orf105Q9NVL8 296 aa18.25■□□□□ 0.51
SYNE4-202ENST00000340477 TRPC4Q9UBN4 977 aa18.25■□□□□ 0.51
SYNE4-202ENST00000340477 CTSFQ9UBX1 484 aa18.25■□□□□ 0.51
SYNE4-202ENST00000340477 ZFP69BQ9UJL9 534 aa18.25■□□□□ 0.51
SYNE4-202ENST00000340477 TUBD1Q9UJT1 453 aa18.25■□□□□ 0.51
SYNE4-202ENST00000340477 TMCO1Q9UM00 188 aa18.25■□□□□ 0.51
SYNE4-202ENST00000340477 KCNMB2Q9Y691 235 aa18.25■□□□□ 0.51
SYNE4-202ENST00000340477 CACNA1GO43497 2377 aa18.25■□□□□ 0.51
SYNE4-202ENST00000340477 CCDC88CQ9P219 2028 aa18.25■□□□□ 0.51
SYNE4-202ENST00000340477 A0A0A6YYC8 382 aaPredicted RBP18.24■□□□□ 0.51
SYNE4-202ENST00000340477 ARGFXA6NJG6 315 aa18.24■□□□□ 0.51
SYNE4-202ENST00000340477 H0YIG0 161 aa18.24■□□□□ 0.51
SYNE4-202ENST00000340477 MKRN2OSH3BPM6 223 aa18.24■□□□□ 0.51
SYNE4-202ENST00000340477 I3L1I5 382 aaPredicted RBP18.24■□□□□ 0.51
SYNE4-202ENST00000340477 LCMT2O60294 686 aaKnown RBP18.24■□□□□ 0.51
SYNE4-202ENST00000340477 MED26O95402 600 aa18.24■□□□□ 0.51
SYNE4-202ENST00000340477 MYBL2P10244 700 aa18.24■□□□□ 0.51
SYNE4-202ENST00000340477 GSTM2P28161 218 aa18.24■□□□□ 0.51
SYNE4-202ENST00000340477 HPDP32754 393 aaPredicted RBP18.24■□□□□ 0.51
SYNE4-202ENST00000340477 SLBPQ14493 270 aaKnown RBP eCLIP18.24■□□□□ 0.51
SYNE4-202ENST00000340477 HERC3Q15034 1050 aa18.24■□□□□ 0.51
SYNE4-202ENST00000340477 NKG7Q16617 165 aa18.24■□□□□ 0.51
SYNE4-202ENST00000340477 XKR6Q5GH73 641 aa18.24■□□□□ 0.51
SYNE4-202ENST00000340477 PAGE2BQ5JRK9 111 aa18.24■□□□□ 0.51
SYNE4-202ENST00000340477 FAM69BQ5VUD6 431 aa18.24■□□□□ 0.51
SYNE4-202ENST00000340477 TMEM214Q6NUQ4 689 aaKnown RBP18.24■□□□□ 0.51
SYNE4-202ENST00000340477 ADGRD1Q6QNK2 874 aa18.24■□□□□ 0.51
SYNE4-202ENST00000340477 COX15Q7KZN9 410 aa18.24■□□□□ 0.51
SYNE4-202ENST00000340477 ABHD13Q7L211 337 aa18.24■□□□□ 0.51
SYNE4-202ENST00000340477 ADAMTS17Q8TE56 1095 aa18.24■□□□□ 0.51
SYNE4-202ENST00000340477 NACC2Q96BF6 587 aa18.24■□□□□ 0.51
SYNE4-202ENST00000340477 TM4SF19Q96DZ7 209 aa18.24■□□□□ 0.51
SYNE4-202ENST00000340477 EFCAB11Q9BUY7 163 aa18.24■□□□□ 0.51
SYNE4-202ENST00000340477 EHD1Q9H4M9 534 aa18.24■□□□□ 0.51
SYNE4-202ENST00000340477 SOX17Q9H6I2 414 aaPredicted RBP18.24■□□□□ 0.51
SYNE4-202ENST00000340477 ANKZF1Q9H8Y5 726 aa18.24■□□□□ 0.51
SYNE4-202ENST00000340477 SYNPO2LQ9H987 977 aa18.24■□□□□ 0.51
SYNE4-202ENST00000340477 MKKSQ9NPJ1 570 aaPredicted RBP18.24■□□□□ 0.51
SYNE4-202ENST00000340477 GEMIN8Q9NWZ8 242 aaKnown RBP18.24■□□□□ 0.51
SYNE4-202ENST00000340477 CPSF2Q9P2I0 782 aaKnown RBP18.24■□□□□ 0.51
SYNE4-202ENST00000340477 K7EPI3 171 aa18.23■□□□□ 0.51
SYNE4-202ENST00000340477 SMIM24O75264 130 aa18.23■□□□□ 0.51
SYNE4-202ENST00000340477 NSA2O95478 260 aaKnown RBP18.23■□□□□ 0.51
SYNE4-202ENST00000340477 VARSP26640 1264 aaKnown RBP18.23■□□□□ 0.51
SYNE4-202ENST00000340477 ALDH18A1P54886 795 aaKnown RBP18.23■□□□□ 0.51
SYNE4-202ENST00000340477 LAPTM5Q13571 262 aa18.23■□□□□ 0.51
SYNE4-202ENST00000340477 ATP1A4Q13733 1029 aa18.23■□□□□ 0.51
SYNE4-202ENST00000340477 RBBP7Q16576 425 aa18.23■□□□□ 0.51
SYNE4-202ENST00000340477 HIST2H2ACQ16777 129 aaPredicted RBP18.23■□□□□ 0.51
SYNE4-202ENST00000340477 FBXO48Q5FWF7 155 aa18.23■□□□□ 0.51
SYNE4-202ENST00000340477 HIST2H2AA3Q6FI13 130 aa18.23■□□□□ 0.51
SYNE4-202ENST00000340477 PCSK4Q6UW60 755 aa18.23■□□□□ 0.51
SYNE4-202ENST00000340477 TMIGD1Q6UXZ0 262 aa18.23■□□□□ 0.51
SYNE4-202ENST00000340477 SLCO4C1Q6ZQN7 724 aa18.23■□□□□ 0.51
SYNE4-202ENST00000340477 MED25Q71SY5 747 aa18.23■□□□□ 0.51
SYNE4-202ENST00000340477 MRGPREQ86SM8 312 aa18.23■□□□□ 0.51
SYNE4-202ENST00000340477 APLFQ8IW19 511 aaPredicted RBP18.23■□□□□ 0.51
SYNE4-202ENST00000340477 DTWD1Q8N5C7 304 aa18.23■□□□□ 0.51
SYNE4-202ENST00000340477 TMEM102Q8N9M5 508 aaPredicted RBP18.23■□□□□ 0.51
SYNE4-202ENST00000340477 ZNF740Q8NDX6 193 aa18.23■□□□□ 0.51
SYNE4-202ENST00000340477 C9orf43Q8TAL5 461 aaPredicted RBP18.23■□□□□ 0.51
SYNE4-202ENST00000340477 NT5CQ8TCD5 201 aa18.23■□□□□ 0.51
SYNE4-202ENST00000340477 STT3BQ8TCJ2 826 aa18.23■□□□□ 0.51
SYNE4-202ENST00000340477 CCT6BQ92526 530 aa18.23■□□□□ 0.51
SYNE4-202ENST00000340477 PTCD3Q96EY7 689 aaKnown RBP18.23■□□□□ 0.51
SYNE4-202ENST00000340477 SEC16BQ96JE7 1060 aa18.23■□□□□ 0.51
SYNE4-202ENST00000340477 FER1L6-AS2Q96M78 137 aa18.23■□□□□ 0.51
SYNE4-202ENST00000340477 CRB3Q9BUF7 120 aa18.23■□□□□ 0.51
SYNE4-202ENST00000340477 SEMA3GQ9NS98 782 aa18.23■□□□□ 0.51
SYNE4-202ENST00000340477 MAP4K5Q9Y4K4 846 aa18.23■□□□□ 0.51
SYNE4-202ENST00000340477 TNPO3Q9Y5L0 923 aaKnown RBP18.23■□□□□ 0.51
SYNE4-202ENST00000340477 SLC22A7Q9Y694 548 aa18.23■□□□□ 0.51
SYNE4-202ENST00000340477 CNOT3O75175 753 aaKnown RBP18.22■□□□□ 0.51
SYNE4-202ENST00000340477 ZGLP1P0C6A0 271 aa18.22■□□□□ 0.51
SYNE4-202ENST00000340477 EPB42P16452 691 aa18.22■□□□□ 0.51
SYNE4-202ENST00000340477 IL1RNP18510 177 aa18.22■□□□□ 0.51
SYNE4-202ENST00000340477 KCNC1P48547 511 aa18.22■□□□□ 0.51
SYNE4-202ENST00000340477 PIK3CGP48736 1102 aa18.22■□□□□ 0.51
SYNE4-202ENST00000340477 IRF8Q02556 426 aa18.22■□□□□ 0.51
SYNE4-202ENST00000340477 SETDB1Q15047 1291 aa18.22■□□□□ 0.51
SYNE4-202ENST00000340477 PFKFB4Q16877 469 aa18.22■□□□□ 0.51
SYNE4-202ENST00000340477 TECRLQ5HYJ1 363 aa18.22■□□□□ 0.51
SYNE4-202ENST00000340477 SHISA6Q6ZSJ9 500 aa18.22■□□□□ 0.51
SYNE4-202ENST00000340477 LCA5Q86VQ0 697 aa18.22■□□□□ 0.51
SYNE4-202ENST00000340477 CLEC1AQ8NC01 280 aa18.22■□□□□ 0.51
SYNE4-202ENST00000340477 OR9A4Q8NGU2 314 aa18.22■□□□□ 0.51
SYNE4-202ENST00000340477 UBE2E3Q969T4 207 aa18.22■□□□□ 0.51
SYNE4-202ENST00000340477 ESAMQ96AP7 390 aa18.22■□□□□ 0.51
SYNE4-202ENST00000340477 SPSB2Q99619 263 aa18.22■□□□□ 0.51
SYNE4-202ENST00000340477 MACROD1Q9BQ69 325 aa18.22■□□□□ 0.51
SYNE4-202ENST00000340477 ING2Q9H160 280 aa18.22■□□□□ 0.51
SYNE4-202ENST00000340477 SPNS1Q9H2V7 528 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms