RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 CLCN3P51790 818 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 FOXO4P98177 505 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 GRM7Q14831 915 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 MEP1AQ16819 746 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 Q5BKY6 102 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 ATPAF1Q5TC12 328 aaPredicted RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 SLC16A13Q7RTY0 426 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 ZFAND4Q86XD8 727 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 SPPL2CQ8IUH8 684 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 CRYBG2Q8N1P7 616 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 ZNF558Q96NG5 402 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 PTCHD1Q96NR3 888 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 NEU1Q99519 415 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 IFT27Q9BW83 186 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 MMP28Q9H239 520 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 GORASP2Q9H8Y8 452 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 NKIRAS2Q9NYR9 191 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 CFAP97Q9P2B7 532 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 BTRCQ9Y297 605 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 POFUT2Q9Y2G5 429 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 KCTD3Q9Y597 815 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 BACE2Q9Y5Z0 518 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 KCNMB2Q9Y691 235 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 CNTNAP2Q9UHC6 1331 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 MEIKINA0A087WXM9 373 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 DFFAO00273 331 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 INPP4BO15327 924 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 ABLIM3O94929 683 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 KDM4BO94953 1096 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 PRSS23O95084 383 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 LGI1O95970 557 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 FDX1P10109 184 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 EDN3P14138 238 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 IL7RP16871 459 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 PAMP19021 973 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 MAGP20916 626 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 MSX1P28360 303 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 RFX2P48378 723 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 RPP30P78346 268 aaKnown RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 BMPR2Q13873 1038 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 C1DQ13901 141 aaKnown RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 SCARB2Q14108 478 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 GRM4Q14833 912 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 SLC9B1Q4ZJI4 515 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 LRIF1Q5T3J3 769 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 ZDHHC14Q8IZN3 488 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 MIER2Q8N344 545 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 ZNF557Q8N988 423 aaPredicted RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 TP53I13Q8NBR0 393 aaPredicted RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 OR52N2Q8NGI0 321 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 CPA5Q8WXQ8 436 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 C22orf15Q8WYQ4 148 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 TMBIM1Q969X1 311 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 RAD9AQ99638 391 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 NUDT16L1Q9BRJ7 211 aaKnown RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 RIOK2Q9BVS4 552 aaKnown RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 MVB12BQ9H7P6 319 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 EXOSC4Q9NPD3 245 aaKnown RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 OXSMQ9NWU1 459 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 ASB1Q9Y576 335 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 SPATA31A1Q5TZJ5 1347 aa4.03□□□□□ -1.77
NEDD4-201ENST00000338963 IGSF9BQ9UPX0 1349 aa4.03□□□□□ -1.77
NEDD4-201ENST00000338963 hCG_1818297A0A087WSY0 165 aa4.03□□□□□ -1.77
NEDD4-201ENST00000338963 USP17L4A6NCW7 530 aa4.03□□□□□ -1.77
NEDD4-201ENST00000338963 OR2AT4A6NND4 320 aa4.03□□□□□ -1.77
NEDD4-201ENST00000338963 ARVCFO00192 962 aa4.03□□□□□ -1.77
NEDD4-201ENST00000338963 NEMP1O14524 444 aa4.03□□□□□ -1.77
NEDD4-201ENST00000338963 MDM4O15151 490 aa4.03□□□□□ -1.77
NEDD4-201ENST00000338963 PRDM1O75626 825 aa4.03□□□□□ -1.77
NEDD4-201ENST00000338963 ATG12O94817 140 aa4.03□□□□□ -1.77
NEDD4-201ENST00000338963 EGFP01133 1207 aa4.03□□□□□ -1.77
NEDD4-201ENST00000338963 USP17L8P0C7I0 530 aa4.03□□□□□ -1.77
NEDD4-201ENST00000338963 RNH1P13489 461 aaKnown RBP4.03□□□□□ -1.77
NEDD4-201ENST00000338963 PKMP14618 531 aaKnown RBP4.03□□□□□ -1.77
NEDD4-201ENST00000338963 DHODHQ02127 395 aa4.03□□□□□ -1.77
NEDD4-201ENST00000338963 SEMA5AQ13591 1074 aa4.03□□□□□ -1.77
NEDD4-201ENST00000338963 TRIP4Q15650 581 aaPredicted RBP4.03□□□□□ -1.77
NEDD4-201ENST00000338963 IL17AQ16552 155 aa4.03□□□□□ -1.77
NEDD4-201ENST00000338963 EXOC3L2Q2M3D2 409 aa4.03□□□□□ -1.77
NEDD4-201ENST00000338963 TFDP3Q5H9I0 405 aa4.03□□□□□ -1.77
NEDD4-201ENST00000338963 ZNF691Q5VV52 312 aa4.03□□□□□ -1.77
NEDD4-201ENST00000338963 C16orf54Q6UWD8 224 aa4.03□□□□□ -1.77
NEDD4-201ENST00000338963 ZCCHC23Q6ZST2 131 aa4.03□□□□□ -1.77
NEDD4-201ENST00000338963 THEM5Q8N1Q8 247 aa4.03□□□□□ -1.77
NEDD4-201ENST00000338963 MTFMTQ96DP5 389 aaKnown RBP4.03□□□□□ -1.77
NEDD4-201ENST00000338963 PWWP2AQ96N64 755 aa4.03□□□□□ -1.77
NEDD4-201ENST00000338963 CDCA3Q99618 268 aaPredicted RBP4.03□□□□□ -1.77
NEDD4-201ENST00000338963 EBNA1BP2Q99848 306 aaKnown RBP4.03□□□□□ -1.77
NEDD4-201ENST00000338963 GSTK1Q9Y2Q3 226 aa4.03□□□□□ -1.77
NEDD4-201ENST00000338963 NPFFR2Q9Y5X5 522 aa4.03□□□□□ -1.77
NEDD4-201ENST00000338963 A0A1W2PRB8 838 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 NAP1L6A6NFF2 107 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 DDX39AO00148 427 aaKnown RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 ZNF195O14628 629 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 ZNF14P17017 642 aaPredicted RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 GPX4P36969 197 aaPredicted RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 CSNK1EP49674 416 aaKnown RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 CCR9P51686 369 aa4.02□□□□□ -1.77
NEDD4-201ENST00000338963 YWHAZP63104 245 aaKnown RBP4.02□□□□□ -1.77
NEDD4-201ENST00000338963 ARF5P84085 180 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 119.9 ms