RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 LRRC66Q68CR7 880 aa18.7■□□□□ 0.58
USP48-201ENST00000308271 KIAA1161Q6NSJ0 714 aa18.7■□□□□ 0.58
USP48-201ENST00000308271 SUSD6Q92537 303 aa18.7■□□□□ 0.58
USP48-201ENST00000308271 SIPA1Q96FS4 1042 aa18.7■□□□□ 0.58
USP48-201ENST00000308271 WDR6Q9NNW5 1121 aaKnown RBP18.7■□□□□ 0.58
USP48-201ENST00000308271 ISM1B1AKI9 464 aa18.7■□□□□ 0.58
USP48-201ENST00000308271 DUSP11O75319 330 aaKnown RBP18.7■□□□□ 0.58
USP48-201ENST00000308271 SOX14O95416 240 aa18.7■□□□□ 0.58
USP48-201ENST00000308271 GABRR2P28476 465 aa18.7■□□□□ 0.58
USP48-201ENST00000308271 CCR4P51679 360 aa18.7■□□□□ 0.58
USP48-201ENST00000308271 GRSF1Q12849 480 aaKnown RBP eCLIP18.7■□□□□ 0.58
USP48-201ENST00000308271 TEPSINQ96N21 525 aa18.7■□□□□ 0.58
USP48-201ENST00000308271 HCN2Q9UL51 889 aa18.7■□□□□ 0.58
USP48-201ENST00000308271 A0A1B0GUL6 1792 aa18.7■□□□□ 0.58
USP48-201ENST00000308271 CARNS1A5YM72 827 aa18.7■□□□□ 0.58
USP48-201ENST00000308271 SERPINA3P01011 423 aa18.7■□□□□ 0.58
USP48-201ENST00000308271 ALDOCP09972 364 aaKnown RBP18.7■□□□□ 0.58
USP48-201ENST00000308271 CPN2P22792 545 aa18.7■□□□□ 0.58
USP48-201ENST00000308271 KCNQ1P51787 676 aa18.7■□□□□ 0.58
USP48-201ENST00000308271 DGKEP52429 567 aa18.7■□□□□ 0.58
USP48-201ENST00000308271 MAZP56270 477 aaKnown RBP18.7■□□□□ 0.58
USP48-201ENST00000308271 RGS1Q08116 209 aa18.7■□□□□ 0.58
USP48-201ENST00000308271 SLBPQ14493 270 aaKnown RBP eCLIP18.7■□□□□ 0.583e-8■■■■■ 73
USP48-201ENST00000308271 RUNDC3AQ59EK9 446 aa18.7■□□□□ 0.58
USP48-201ENST00000308271 SH2D5Q6ZV89 423 aa18.7■□□□□ 0.58
USP48-201ENST00000308271 AMIGO1Q86WK6 493 aa18.7■□□□□ 0.58
USP48-201ENST00000308271 CHPFQ8IZ52 775 aa18.7■□□□□ 0.58
USP48-201ENST00000308271 DENND6BQ8NEG7 585 aa18.7■□□□□ 0.58
USP48-201ENST00000308271 AKAP1Q92667 903 aaKnown RBP eCLIP18.7■□□□□ 0.58
USP48-201ENST00000308271 ASAH2Q9NR71 780 aa18.7■□□□□ 0.58
USP48-201ENST00000308271 CTPS2Q9NRF8 586 aa18.7■□□□□ 0.58
USP48-201ENST00000308271 RAB36O95755 333 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 EOMESO95936 686 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 RPS17P08708 135 aaKnown RBP18.69■□□□□ 0.58
USP48-201ENST00000308271 FUT4P22083 530 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 RNF44Q7L0R7 432 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 THOC6Q86W42 341 aaKnown RBP18.69■□□□□ 0.58
USP48-201ENST00000308271 TMEM130Q8N3G9 435 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 BEX2Q9BXY8 128 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 MROQ9BYG7 248 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 CCSER2Q9H7U1 834 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 TMEM27Q9HBJ8 222 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 P2RX2Q9UBL9 471 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 PRKAB1Q9Y478 270 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 HIST1H2ABP04908 130 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 IFNA16P05015 189 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 ALPLP05186 524 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 SPATA31D3P0C874 917 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 SKP1P63208 163 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 PAMR1Q6UXH9 720 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 SPATA31D4Q6ZUB0 917 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 HIST3H2AQ7L7L0 130 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 HIST1H2ACQ93077 130 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 CREB3L1Q96BA8 519 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 FEVQ99581 238 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 GTPBP2Q9BX10 602 aaKnown RBP18.69■□□□□ 0.58
USP48-201ENST00000308271 ZCCHC3Q9NUD5 404 aaKnown RBP18.69■□□□□ 0.58
USP48-201ENST00000308271 DCAF13Q9NV06 445 aaKnown RBP18.69■□□□□ 0.58
USP48-201ENST00000308271 RDH8Q9NYR8 311 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 ERVW-1Q9UQF0 538 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 HLA-DQA2P01906 255 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 OR1E2P47887 323 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 AGAP7PQ5VUJ5 663 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 TMEM220Q6QAJ8 160 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 CEACAM20Q6UY09 585 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 MSANTD1Q6ZTZ1 278 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 MAELQ96JY0 434 aaKnown RBP18.69■□□□□ 0.58
USP48-201ENST00000308271 TSSK6Q9BXA6 273 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 TP63Q9H3D4 680 aaPredicted RBP18.69■□□□□ 0.58
USP48-201ENST00000308271 TNFRSF10DQ9UBN6 386 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 ZNF451Q9Y4E5 1061 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 TGFB1P01137 390 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 BCHEP06276 602 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 RHAGQ02094 409 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 PUDPQ08623 228 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 SP140Q13342 867 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 HS3ST5Q8IZT8 346 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 MUL1Q969V5 352 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 CHIAQ9BZP6 476 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 PCDHB11Q9Y5F2 797 aa18.69■□□□□ 0.58
USP48-201ENST00000308271 PCDH1Q08174 1060 aa18.68■□□□□ 0.58
USP48-201ENST00000308271 MBOAT1Q6ZNC8 495 aa18.68■□□□□ 0.58
USP48-201ENST00000308271 C2orf73Q8N5S3 287 aaPredicted RBP18.68■□□□□ 0.58
USP48-201ENST00000308271 NETO1Q8TDF5 533 aa18.68■□□□□ 0.58
USP48-201ENST00000308271 KAT2AQ92830 837 aa18.68■□□□□ 0.58
USP48-201ENST00000308271 BTBD1Q9H0C5 482 aa18.68■□□□□ 0.58
USP48-201ENST00000308271 VAPAQ9P0L0 249 aa18.68■□□□□ 0.58
USP48-201ENST00000308271 SH3D21A4FU49 640 aa18.68■□□□□ 0.58
USP48-201ENST00000308271 CLDN7O95471 211 aa18.68■□□□□ 0.58
USP48-201ENST00000308271 IRAK1BP1Q5VVH5 260 aa18.68■□□□□ 0.58
USP48-201ENST00000308271 REEP3Q6NUK4 255 aa18.68■□□□□ 0.58
USP48-201ENST00000308271 BPIFB1Q8TDL5 484 aa18.68■□□□□ 0.58
USP48-201ENST00000308271 MYOCQ99972 504 aa18.68■□□□□ 0.58
USP48-201ENST00000308271 SLA2Q9H6Q3 261 aa18.68■□□□□ 0.58
USP48-201ENST00000308271 TXNRD2Q9NNW7 524 aa18.68■□□□□ 0.58
USP48-201ENST00000308271 CD300AQ9UGN4 299 aa18.68■□□□□ 0.58
USP48-201ENST00000308271 EXOSC1Q9Y3B2 195 aaKnown RBP18.68■□□□□ 0.58
USP48-201ENST00000308271 MAGED1Q9Y5V3 778 aaPredicted RBP18.68■□□□□ 0.58
USP48-201ENST00000308271 PDYNP01213 254 aa18.68■□□□□ 0.58
USP48-201ENST00000308271 CSKP41240 450 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms