RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 GAB1Q13480 694 aa23.05■■□□□ 1.28
TRIM54-201ENST00000296098 VEZF1Q14119 521 aa23.05■■□□□ 1.28
TRIM54-201ENST00000296098 RFX4Q33E94 735 aa23.05■■□□□ 1.28
TRIM54-201ENST00000296098 TMEM26Q6ZUK4 368 aa23.05■■□□□ 1.28
TRIM54-201ENST00000296098 KCTD8Q6ZWB6 473 aa23.05■■□□□ 1.28
TRIM54-201ENST00000296098 GALNT10Q86SR1 603 aa23.05■■□□□ 1.28
TRIM54-201ENST00000296098 ERI1Q8IV48 349 aaKnown RBP23.05■■□□□ 1.28
TRIM54-201ENST00000296098 CPA6Q8N4T0 437 aa23.05■■□□□ 1.28
TRIM54-201ENST00000296098 OR4A15Q8NGL6 344 aa23.05■■□□□ 1.28
TRIM54-201ENST00000296098 COX14Q96I36 57 aa23.05■■□□□ 1.28
TRIM54-201ENST00000296098 BHLHE41Q9C0J9 482 aaPredicted RBP23.05■■□□□ 1.28
TRIM54-201ENST00000296098 CHST8Q9H2A9 424 aa23.05■■□□□ 1.28
TRIM54-201ENST00000296098 FZD4Q9ULV1 537 aa23.05■■□□□ 1.28
TRIM54-201ENST00000296098 ASF1AQ9Y294 204 aa23.05■■□□□ 1.28
TRIM54-201ENST00000296098 GMEB1Q9Y692 573 aa23.05■■□□□ 1.28
TRIM54-201ENST00000296098 FABP3P05413 133 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 TTKP33981 857 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 PHEXP78562 749 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 RBM48Q5RL73 367 aaKnown RBP23.04■■□□□ 1.28
TRIM54-201ENST00000296098 PRAMEF14Q5SWL7 426 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 PRAMEF13Q5VWM6 474 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 FAM109BQ6ICB4 259 aaPredicted RBP23.04■■□□□ 1.28
TRIM54-201ENST00000296098 OR2T5Q6IEZ7 315 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 ZNF773Q6PK81 442 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 CBLL1Q75N03 491 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 EIF3MQ7L2H7 374 aaKnown RBP23.04■■□□□ 1.28
TRIM54-201ENST00000296098 ARMCX6Q7L4S7 300 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 OR2T29Q8NH02 315 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 GABARAPL1Q9H0R8 117 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 SPNS1Q9H2V7 528 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 REEP4Q9H6H4 257 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 TRPV4Q9HBA0 871 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 TM9SF3Q9HD45 589 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 GDE1Q9NZC3 331 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 ZNF282Q9UDV7 671 aaPredicted RBP23.04■■□□□ 1.28
TRIM54-201ENST00000296098 TMEFF2Q9UIK5 374 aaPredicted RBP23.04■■□□□ 1.28
TRIM54-201ENST00000296098 EXO1Q9UQ84 846 aaKnown RBP23.04■■□□□ 1.28
TRIM54-201ENST00000296098 PRKAB1Q9Y478 270 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 PCYT1BQ9Y5K3 369 aaPredicted RBP23.04■■□□□ 1.28
TRIM54-201ENST00000296098 ZNF701M0R085 212 aaPredicted RBP23.04■■□□□ 1.28
TRIM54-201ENST00000296098 EEF1B2P24534 225 aaKnown RBP23.04■■□□□ 1.28
TRIM54-201ENST00000296098 RAD23AP54725 363 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 MEF2AQ02078 507 aaPredicted RBP23.04■■□□□ 1.28
TRIM54-201ENST00000296098 PMS2P3Q13401 168 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 ZNF385BQ569K4 471 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 PIP5KL1Q5T9C9 394 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 HEATR4Q86WZ0 1026 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 ZFP90Q8TF47 636 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 ISOC1Q96CN7 298 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 HSH2DQ96JZ2 352 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 THAP10Q9P2Z0 257 aaPredicted RBP23.04■■□□□ 1.28
TRIM54-201ENST00000296098 PCDHGA8Q9Y5G5 932 aa23.04■■□□□ 1.28
TRIM54-201ENST00000296098 PI15O43692 258 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 TGFB1P01137 390 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 RPA4Q13156 261 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 C16orf72Q14CZ0 275 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 PUM2Q8TB72 1066 aaKnown RBP eCLIP23.03■■□□□ 1.28
TRIM54-201ENST00000296098 SETD7Q8WTS6 366 aaKnown RBP23.03■■□□□ 1.28
TRIM54-201ENST00000296098 HDAC2Q92769 488 aaKnown RBP23.03■■□□□ 1.28
TRIM54-201ENST00000296098 UBE2E3Q969T4 207 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 RAD51AP1Q96B01 352 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 IL17FQ96PD4 163 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 ASPSCR1Q9BZE9 553 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 OR51B5Q9H339 312 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 LTB4R2Q9NPC1 389 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 ATAD3AQ9NVI7 634 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 LAMA3Q16787 3333 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 SAP18O00422 153 aaKnown RBP23.03■■□□□ 1.28
TRIM54-201ENST00000296098 PCCBP05166 539 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 IL7RP16871 459 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 KELP23276 732 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 PIK3CBP42338 1070 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 ERVK-21P61565 698 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 RAB39AQ14964 217 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 RGNQ15493 299 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 FAM46CQ5VWP2 391 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 TANGO2Q6ICL3 276 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 VITQ6UXI7 678 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 CHST15Q7LFX5 561 aaPredicted RBP23.03■■□□□ 1.28
TRIM54-201ENST00000296098 VTCN1Q7Z7D3 282 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 AMZ2Q86W34 360 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 DCP2Q8IU60 420 aaKnown RBP23.03■■□□□ 1.28
TRIM54-201ENST00000296098 DCUN1D3Q8IWE4 304 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 OR5AR1Q8NGP9 310 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 ADNPQ9H2P0 1102 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 CXorf21Q9HAI6 301 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 BAG5Q9UL15 447 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 PLAGL1Q9UM63 463 aa23.03■■□□□ 1.28
TRIM54-201ENST00000296098 NUP214P35658 2090 aaPredicted RBP23.02■■□□□ 1.28
TRIM54-201ENST00000296098 ANTXRLA6NF34 631 aa23.02■■□□□ 1.28
TRIM54-201ENST00000296098 hCG_2039718K7EN88 272 aa23.02■■□□□ 1.28
TRIM54-201ENST00000296098 B4GAT1O43505 415 aa23.02■■□□□ 1.28
TRIM54-201ENST00000296098 GBAP04062 536 aa23.02■■□□□ 1.28
TRIM54-201ENST00000296098 IGFBP5P24593 272 aa23.02■■□□□ 1.28
TRIM54-201ENST00000296098 ZC3H12BQ5HYM0 836 aaKnown RBP23.02■■□□□ 1.28
TRIM54-201ENST00000296098 BROXQ5VW32 411 aa23.02■■□□□ 1.28
TRIM54-201ENST00000296098 PNCKQ6P2M8 343 aa23.02■■□□□ 1.28
TRIM54-201ENST00000296098 LCTLQ6UWM7 567 aa23.02■■□□□ 1.28
TRIM54-201ENST00000296098 R3HCC1LQ7Z5L2 792 aaKnown RBP23.02■■□□□ 1.28
TRIM54-201ENST00000296098 CHDHQ8NE62 594 aaPredicted RBP23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms