RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 RPS3AP61247 264 aaKnown RBP20.54■□□□□ 0.88
TRIM28-201ENST00000253024 SPIBQ01892 262 aa20.54■□□□□ 0.88
TRIM28-201ENST00000253024 LY6G5CQ5SRR4 150 aa20.54■□□□□ 0.88
TRIM28-201ENST00000253024 GDPD4Q6W3E5 623 aa20.54■□□□□ 0.88
TRIM28-201ENST00000253024 DDX53Q86TM3 631 aaKnown RBP20.54■□□□□ 0.88
TRIM28-201ENST00000253024 ENTHD1Q8IYW4 607 aa20.54■□□□□ 0.88
TRIM28-201ENST00000253024 RASGEF1AQ8N9B8 481 aa20.54■□□□□ 0.88
TRIM28-201ENST00000253024 OR2A12Q8NGT7 310 aa20.54■□□□□ 0.88
TRIM28-201ENST00000253024 NFKBIDQ8NI38 313 aa20.54■□□□□ 0.88
TRIM28-201ENST00000253024 TRMT2BQ96GJ1 504 aaKnown RBP20.54■□□□□ 0.88
TRIM28-201ENST00000253024 SPNS1Q9H2V7 528 aa20.54■□□□□ 0.88
TRIM28-201ENST00000253024 STOML2Q9UJZ1 356 aa20.54■□□□□ 0.88
TRIM28-201ENST00000253024 OGDHLQ9ULD0 1010 aa20.54■□□□□ 0.88
TRIM28-201ENST00000253024 CKAP5Q14008 2032 aa20.54■□□□□ 0.88
TRIM28-201ENST00000253024 A0A0G2JN53 185 aa20.54■□□□□ 0.88
TRIM28-201ENST00000253024 RTCAO00442 366 aaKnown RBP20.54■□□□□ 0.88
TRIM28-201ENST00000253024 SULT1C4O75897 302 aa20.54■□□□□ 0.88
TRIM28-201ENST00000253024 ST13P50502 369 aaKnown RBP20.54■□□□□ 0.88
TRIM28-201ENST00000253024 HBA1P69905 142 aa20.54■□□□□ 0.88
TRIM28-201ENST00000253024 MESP2Q0VG99 397 aa20.54■□□□□ 0.88
TRIM28-201ENST00000253024 LYPLAL1Q5VWZ2 237 aa20.54■□□□□ 0.88
TRIM28-201ENST00000253024 WDR48Q8TAF3 677 aa20.54■□□□□ 0.88
TRIM28-201ENST00000253024 ALPK1Q96QP1 1244 aa20.54■□□□□ 0.88
TRIM28-201ENST00000253024 NEURL2Q9BR09 285 aa20.54■□□□□ 0.88
TRIM28-201ENST00000253024 TM9SF3Q9HD45 589 aa20.54■□□□□ 0.88
TRIM28-201ENST00000253024 ACOT13Q9NPJ3 140 aa20.54■□□□□ 0.88
TRIM28-201ENST00000253024 STOX2Q9P2F5 926 aaPredicted RBP20.54■□□□□ 0.88
TRIM28-201ENST00000253024 MAN2B2Q9Y2E5 1009 aa20.54■□□□□ 0.88
TRIM28-201ENST00000253024 SLC16A6O15403 523 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 SGTAO43765 313 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 CBFA2T3O75081 653 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 C8GP07360 202 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 TYRP14679 529 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 ITIH1P19827 911 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 FPR1P21462 350 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 MAPK1P28482 360 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 FEN1P39748 380 aaKnown RBP20.53■□□□□ 0.88
TRIM28-201ENST00000253024 TUBA3CQ13748 450 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 KIAA1614Q5VZ46 1190 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 TPGS2Q68CL5 300 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 TRAPPC5Q8IUR0 188 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 SLC39A11Q8N1S5 342 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 OR7G3Q8NG95 312 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 ASZ1Q8WWH4 475 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 LGALS12Q96DT0 336 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 PKP4Q99569 1192 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 APOL4Q9BPW4 351 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 COPS4Q9BT78 406 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 TRIM17Q9Y577 477 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 ATG2BQ96BY7 2078 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 STSP08842 583 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 HLA-EP13747 358 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 HOXD10P28358 340 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 RAB33AQ14088 237 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 HPS1Q92902 700 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 ZHX1-C8orf76Q96EF9 292 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 YME1L1Q96TA2 773 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 INIPQ9NRY2 104 aa20.53■□□□□ 0.88
TRIM28-201ENST00000253024 TRAV19A0A0A6YYK7 116 aa20.52■□□□□ 0.88
TRIM28-201ENST00000253024 LINC00854A0A1B0GVQ3 168 aa20.52■□□□□ 0.88
TRIM28-201ENST00000253024 M0QX08 132 aa20.52■□□□□ 0.88
TRIM28-201ENST00000253024 SCAMP1O15126 338 aa20.52■□□□□ 0.88
TRIM28-201ENST00000253024 GTF2E2P29084 291 aaKnown RBP20.52■□□□□ 0.88
TRIM28-201ENST00000253024 RAE1P78406 368 aaKnown RBP20.52■□□□□ 0.88
TRIM28-201ENST00000253024 TEAD2Q15562 447 aa20.52■□□□□ 0.88
TRIM28-201ENST00000253024 ANKRD13BQ86YJ7 626 aa20.52■□□□□ 0.88
TRIM28-201ENST00000253024 CCDC103Q8IW40 242 aa20.52■□□□□ 0.88
TRIM28-201ENST00000253024 APH1BQ8WW43 257 aa20.52■□□□□ 0.88
TRIM28-201ENST00000253024 TESCQ96BS2 214 aa20.52■□□□□ 0.88
TRIM28-201ENST00000253024 CAPNS2Q96L46 248 aa20.52■□□□□ 0.88
TRIM28-201ENST00000253024 RNF208Q9H0X6 261 aa20.52■□□□□ 0.88
TRIM28-201ENST00000253024 SPG21Q9NZD8 308 aa20.52■□□□□ 0.88
TRIM28-201ENST00000253024 RAB23Q9ULC3 237 aa20.52■□□□□ 0.88
TRIM28-201ENST00000253024 RNF6Q9Y252 685 aa20.52■□□□□ 0.88
TRIM28-201ENST00000253024 TNFRSF11BO00300 401 aa20.52■□□□□ 0.88
TRIM28-201ENST00000253024 POP4O95707 220 aaKnown RBP20.52■□□□□ 0.88
TRIM28-201ENST00000253024 PRIM2P49643 509 aa20.52■□□□□ 0.88
TRIM28-201ENST00000253024 TRMT11Q7Z4G4 463 aaKnown RBP20.52■□□□□ 0.88
TRIM28-201ENST00000253024 CSGALNACT1Q8TDX6 532 aa20.52■□□□□ 0.88
TRIM28-201ENST00000253024 RDH12Q96NR8 316 aa20.52■□□□□ 0.88
TRIM28-201ENST00000253024 EFCAB9A8MZ26 197 aa20.52■□□□□ 0.87
TRIM28-201ENST00000253024 TBX1O43435 398 aa20.52■□□□□ 0.87
TRIM28-201ENST00000253024 MYO1DO94832 1006 aa20.52■□□□□ 0.87
TRIM28-201ENST00000253024 CTSLP07711 333 aa20.52■□□□□ 0.87
TRIM28-201ENST00000253024 PABPC1P11940 636 aaKnown RBP20.52■□□□□ 0.87
TRIM28-201ENST00000253024 ZNF12P17014 697 aa20.52■□□□□ 0.87
TRIM28-201ENST00000253024 HOXB9P17482 250 aaPredicted RBP20.52■□□□□ 0.87
TRIM28-201ENST00000253024 GRK5P34947 590 aa20.52■□□□□ 0.87
TRIM28-201ENST00000253024 RPS26P11Q5JNZ5 115 aaPredicted RBP20.52■□□□□ 0.87
TRIM28-201ENST00000253024 L3MBTL4Q8NA19 623 aa20.52■□□□□ 0.87
TRIM28-201ENST00000253024 SETD9Q8NE22 299 aa20.52■□□□□ 0.87
TRIM28-201ENST00000253024 ZNF347Q96SE7 839 aa20.52■□□□□ 0.87
TRIM28-201ENST00000253024 CHCHD6Q9BRQ6 235 aa20.52■□□□□ 0.87
TRIM28-201ENST00000253024 MAGIXQ9H6Y5 334 aa20.52■□□□□ 0.87
TRIM28-201ENST00000253024 NUAK1O60285 661 aa20.51■□□□□ 0.87
TRIM28-201ENST00000253024 TPST2O60704 377 aa20.51■□□□□ 0.87
TRIM28-201ENST00000253024 CCDC159P0C7I6 412 aa20.51■□□□□ 0.87
TRIM28-201ENST00000253024 GADD45AP24522 165 aa20.51■□□□□ 0.87
TRIM28-201ENST00000253024 IMPA1P29218 277 aa20.51■□□□□ 0.87
TRIM28-201ENST00000253024 RYKP34925 604 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms