RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 A0A1W2PQ72 361 aa3.09□□□□□ -1.91
CD44-239ENST00000639002 TRAFD1O14545 582 aaPredicted RBP3.09□□□□□ -1.91
CD44-239ENST00000639002 SNX3O60493 162 aa3.09□□□□□ -1.91
CD44-239ENST00000639002 GSRP00390 522 aa3.09□□□□□ -1.91
CD44-239ENST00000639002 AADACP22760 399 aa3.09□□□□□ -1.91
CD44-239ENST00000639002 LMAN1P49257 510 aa3.09□□□□□ -1.91
CD44-239ENST00000639002 ASCL1P50553 236 aa3.09□□□□□ -1.91
CD44-239ENST00000639002 NDST2P52849 883 aa3.09□□□□□ -1.91
CD44-239ENST00000639002 NDUFV3P56181 108 aaKnown RBP3.09□□□□□ -1.91
CD44-239ENST00000639002 UBXN2AP68543 259 aa3.09□□□□□ -1.91
CD44-239ENST00000639002 NDPQ00604 133 aa3.09□□□□□ -1.91
CD44-239ENST00000639002 DUSP5Q16690 384 aa3.09□□□□□ -1.91
CD44-239ENST00000639002 ALDH1L2Q3SY69 923 aa3.09□□□□□ -1.91
CD44-239ENST00000639002 PRR30Q53SZ7 412 aaPredicted RBP3.09□□□□□ -1.91
CD44-239ENST00000639002 CPEB2Q7Z5Q1 589 aaKnown RBP3.09□□□□□ -1.91
CD44-239ENST00000639002 KCNE4Q8WWG9 221 aa3.09□□□□□ -1.91
CD44-239ENST00000639002 LINC00615Q96LM1 132 aaPredicted RBP3.09□□□□□ -1.91
CD44-239ENST00000639002 NDNQ99608 321 aa3.09□□□□□ -1.91
CD44-239ENST00000639002 MXD3Q9BW11 206 aa3.09□□□□□ -1.91
CD44-239ENST00000639002 CCDC106Q9BWC9 280 aa3.09□□□□□ -1.91
CD44-239ENST00000639002 RAVER2Q9HCJ3 691 aaKnown RBP3.09□□□□□ -1.91
CD44-239ENST00000639002 TNFRSF19Q9NS68 423 aa3.09□□□□□ -1.91
CD44-239ENST00000639002 HACD3Q9P035 362 aa3.09□□□□□ -1.91
CD44-239ENST00000639002 GPR34Q9UPC5 381 aa3.09□□□□□ -1.91
CD44-239ENST00000639002 COL4A4P53420 1690 aaPredicted RBP3.08□□□□□ -1.92
CD44-239ENST00000639002 TRAV24A0A0B4J272 114 aa3.08□□□□□ -1.92
CD44-239ENST00000639002 ARHGEF33A8MVX0 844 aa3.08□□□□□ -1.92
CD44-239ENST00000639002 SLC1A7O00341 560 aa3.08□□□□□ -1.92
CD44-239ENST00000639002 RTCAO00442 366 aaKnown RBP3.08□□□□□ -1.92
CD44-239ENST00000639002 CYTIPO60759 359 aa3.08□□□□□ -1.92
CD44-239ENST00000639002 SAP30O75446 220 aa3.08□□□□□ -1.92
CD44-239ENST00000639002 ATP5BP06576 529 aaKnown RBP3.08□□□□□ -1.92
CD44-239ENST00000639002 AZGP1P25311 298 aaKnown RBP3.08□□□□□ -1.92
CD44-239ENST00000639002 GEMIN4P57678 1058 aaKnown RBP3.08□□□□□ -1.92
CD44-239ENST00000639002 POU5F1Q01860 360 aaKnown RBP3.08□□□□□ -1.92
CD44-239ENST00000639002 SIM2Q14190 667 aaPredicted RBP3.08□□□□□ -1.92
CD44-239ENST00000639002 PTPRCAPQ14761 206 aa3.08□□□□□ -1.92
CD44-239ENST00000639002 NONOQ15233 471 aaKnown RBP eCLIP3.08□□□□□ -1.92
CD44-239ENST00000639002 ITPRIPL1Q6GPH6 555 aa3.08□□□□□ -1.92
CD44-239ENST00000639002 CTR9Q6PD62 1173 aa3.08□□□□□ -1.92
CD44-239ENST00000639002 BAIAP2L2Q6UXY1 529 aa3.08□□□□□ -1.92
CD44-239ENST00000639002 ADCK1Q86TW2 530 aa3.08□□□□□ -1.92
CD44-239ENST00000639002 RNF130Q86XS8 419 aa3.08□□□□□ -1.92
CD44-239ENST00000639002 SLC22A15Q8IZD6 547 aa3.08□□□□□ -1.92
CD44-239ENST00000639002 ANKRD13CQ8N6S4 541 aa3.08□□□□□ -1.92
CD44-239ENST00000639002 TCEANCQ8N8B7 351 aa3.08□□□□□ -1.92
CD44-239ENST00000639002 TC2NQ8N9U0 490 aa3.08□□□□□ -1.92
CD44-239ENST00000639002 PROX1Q92786 737 aa3.08□□□□□ -1.92
CD44-239ENST00000639002 OTUB1Q96FW1 271 aaPredicted RBP3.08□□□□□ -1.92
CD44-239ENST00000639002 CYYR1Q96J86 154 aa3.08□□□□□ -1.92
CD44-239ENST00000639002 CNOT6LQ96LI5 555 aaKnown RBP3.08□□□□□ -1.92
CD44-239ENST00000639002 PSMB7Q99436 277 aa3.08□□□□□ -1.92
CD44-239ENST00000639002 KLHL4Q9C0H6 718 aa3.08□□□□□ -1.92
CD44-239ENST00000639002 IL1RAPQ9NPH3 570 aa3.08□□□□□ -1.92
CD44-239ENST00000639002 TBC1D13Q9NVG8 400 aa3.08□□□□□ -1.92
CD44-239ENST00000639002 NLGN3Q9NZ94 848 aa3.08□□□□□ -1.92
CD44-239ENST00000639002 B4GALT7Q9UBV7 327 aa3.08□□□□□ -1.92
CD44-239ENST00000639002 PPIEQ9UNP9 301 aaKnown RBP3.08□□□□□ -1.92
CD44-239ENST00000639002 VSIG4Q9Y279 399 aa3.08□□□□□ -1.92
CD44-239ENST00000639002 FER1L5A0AVI2 2057 aa3.07□□□□□ -1.92
CD44-239ENST00000639002 RNF103O00237 685 aa3.07□□□□□ -1.92
CD44-239ENST00000639002 F3P13726 295 aa3.07□□□□□ -1.92
CD44-239ENST00000639002 CD59P13987 128 aa3.07□□□□□ -1.92
CD44-239ENST00000639002 KLK2P20151 261 aa3.07□□□□□ -1.92
CD44-239ENST00000639002 DUTP33316 252 aaKnown RBP3.07□□□□□ -1.92
CD44-239ENST00000639002 ACTN2P35609 894 aa3.07□□□□□ -1.92
CD44-239ENST00000639002 CCR3P51677 355 aa3.07□□□□□ -1.92
CD44-239ENST00000639002 TMEM266Q2M3C6 531 aa3.07□□□□□ -1.92
CD44-239ENST00000639002 FAM166AQ6J272 317 aa3.07□□□□□ -1.92
CD44-239ENST00000639002 CYB5D1Q6P9G0 228 aa3.07□□□□□ -1.92
CD44-239ENST00000639002 ZC3H3Q8IXZ2 948 aaKnown RBP3.07□□□□□ -1.92
CD44-239ENST00000639002 C4orf32Q8N8J7 132 aa3.07□□□□□ -1.92
CD44-239ENST00000639002 GBP7Q8N8V2 638 aaPredicted RBP3.07□□□□□ -1.92
CD44-239ENST00000639002 SPPL2AQ8TCT8 520 aa3.07□□□□□ -1.92
CD44-239ENST00000639002 CHURC1Q8WUH1 139 aa3.07□□□□□ -1.92
CD44-239ENST00000639002 C11orf52Q96A22 123 aa3.07□□□□□ -1.92
CD44-239ENST00000639002 RFT1Q96AA3 541 aa3.07□□□□□ -1.92
CD44-239ENST00000639002 NEDD4LQ96PU5 975 aa3.07□□□□□ -1.92
CD44-239ENST00000639002 ACTL8Q9H568 366 aa3.07□□□□□ -1.92
CD44-239ENST00000639002 ZNF581Q9P0T4 197 aa3.07□□□□□ -1.92
CD44-239ENST00000639002 ANAPC2Q9UJX6 822 aa3.07□□□□□ -1.92
CD44-239ENST00000639002 TMEM5Q9Y2B1 443 aa3.07□□□□□ -1.92
CD44-239ENST00000639002 MRPS18CQ9Y3D5 142 aaKnown RBP3.07□□□□□ -1.92
CD44-239ENST00000639002 A0A087WZ39 114 aa3.06□□□□□ -1.92
CD44-239ENST00000639002 hCG_1809904A0A1W2PP81 198 aa3.06□□□□□ -1.92
CD44-239ENST00000639002 A0A1W2PPE2 198 aa3.06□□□□□ -1.92
CD44-239ENST00000639002 A0A1W2PR64 198 aa3.06□□□□□ -1.92
CD44-239ENST00000639002 RENP00797 406 aa3.06□□□□□ -1.92
CD44-239ENST00000639002 LIG4P49917 911 aa3.06□□□□□ -1.92
CD44-239ENST00000639002 UBASH3AP57075 661 aa3.06□□□□□ -1.92
CD44-239ENST00000639002 ERVK-16P61578 105 aa3.06□□□□□ -1.92
CD44-239ENST00000639002 KIAA0141Q14154 515 aaPredicted RBP3.06□□□□□ -1.92
CD44-239ENST00000639002 SIX1Q15475 284 aaPredicted RBP3.06□□□□□ -1.92
CD44-239ENST00000639002 FAM106AQ4KMX7 169 aa3.06□□□□□ -1.92
CD44-239ENST00000639002 C9orf66Q5T8R8 295 aa3.06□□□□□ -1.92
CD44-239ENST00000639002 SUSD4Q5VX71 490 aa3.06□□□□□ -1.92
CD44-239ENST00000639002 RNLSQ5VYX0 342 aa3.06□□□□□ -1.92
CD44-239ENST00000639002 CCBE1Q6UXH8 406 aaPredicted RBP3.06□□□□□ -1.92
CD44-239ENST00000639002 ZBTB49Q6ZSB9 765 aa3.06□□□□□ -1.92
CD44-239ENST00000639002 ZBED8Q8IZ13 594 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms