RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 ZNF480Q8WV37 535 aa18.32■□□□□ 0.52
CLN3-262ENST00000637699 UTP23Q9BRU9 249 aaKnown RBP18.32■□□□□ 0.52
CLN3-262ENST00000637699 HCN3Q9P1Z3 774 aa18.32■□□□□ 0.52
CLN3-262ENST00000637699 NPIPA1Q9UND3 350 aa18.32■□□□□ 0.52
CLN3-262ENST00000637699 MEMO1Q9Y316 297 aa18.32■□□□□ 0.52
CLN3-262ENST00000637699 PCDHGB6Q9Y5F9 930 aa18.32■□□□□ 0.52
CLN3-262ENST00000637699 ZFHX3Q15911 3703 aa18.32■□□□□ 0.52
CLN3-262ENST00000637699 CACNA1CQ13936 2221 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 ZNF839A8K0R7 811 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 E5RI56 91 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 E7ENX8 843 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 H0YIG0 161 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 H7BY64 318 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 PFDN6O15212 129 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 ZNHIT1O43257 154 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 MLYCDO95822 493 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 EEF1DP29692 281 aaKnown RBP18.31■□□□□ 0.52
CLN3-262ENST00000637699 XCR1P46094 333 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 ABATP80404 500 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 BASP1P80723 227 aaKnown RBP18.31■□□□□ 0.52
CLN3-262ENST00000637699 TAP2Q03519 686 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 RELAQ04206 551 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 OR1C1Q15619 314 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 MEP1AQ16819 746 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 TYSND1Q2T9J0 566 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 RNF187Q5TA31 235 aaPredicted RBP18.31■□□□□ 0.52
CLN3-262ENST00000637699 Q6ZPB1 254 aaPredicted RBP18.31■□□□□ 0.52
CLN3-262ENST00000637699 ANKRD37Q7Z713 158 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 SLC13A5Q86YT5 568 aaPredicted RBP18.31■□□□□ 0.52
CLN3-262ENST00000637699 TMEM139Q8IV31 216 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 SPNS2Q8IVW8 549 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 CEP97Q8IW35 865 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 REXO1L1PQ8IX06 675 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 PRAP1Q96NZ9 151 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 NPAS2Q99743 824 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 MACROD1Q9BQ69 325 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 GPAMQ9HCL2 828 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 EIF2B3Q9NR50 452 aaKnown RBP18.31■□□□□ 0.52
CLN3-262ENST00000637699 SYBUQ9NX95 663 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 MED13LQ71F56 2210 aa18.31■□□□□ 0.52
CLN3-262ENST00000637699 MAN1A2O60476 641 aa18.3■□□□□ 0.52
CLN3-262ENST00000637699 NSA2O95478 260 aaKnown RBP18.3■□□□□ 0.52
CLN3-262ENST00000637699 CD46P15529 392 aa18.3■□□□□ 0.52
CLN3-262ENST00000637699 OC90Q02509 493 aaPredicted RBP18.3■□□□□ 0.52
CLN3-262ENST00000637699 SCMH1Q96GD3 660 aa18.3■□□□□ 0.52
CLN3-262ENST00000637699 TCF12Q99081 682 aa18.3■□□□□ 0.52
CLN3-262ENST00000637699 EBNA1BP2Q99848 306 aaKnown RBP18.3■□□□□ 0.52
CLN3-262ENST00000637699 BAG1Q99933 345 aaPredicted RBP18.3■□□□□ 0.52
CLN3-262ENST00000637699 KIFC1Q9BW19 673 aa18.3■□□□□ 0.52
CLN3-262ENST00000637699 DRG1Q9Y295 367 aaKnown RBP18.3■□□□□ 0.52
CLN3-262ENST00000637699 CAPN6Q9Y6Q1 641 aa18.3■□□□□ 0.52
CLN3-262ENST00000637699 SCN3AQ9NY46 2000 aa18.3■□□□□ 0.52
CLN3-262ENST00000637699 SGK494L7N484 410 aa18.29■□□□□ 0.52
CLN3-262ENST00000637699 ABOP16442 354 aa18.29■□□□□ 0.52
CLN3-262ENST00000637699 IL1RNP18510 177 aa18.29■□□□□ 0.52
CLN3-262ENST00000637699 ADARP55265 1226 aaKnown RBP18.29■□□□□ 0.52
CLN3-262ENST00000637699 PTK6Q13882 451 aa18.29■□□□□ 0.52
CLN3-262ENST00000637699 GALNTL5Q7Z4T8 443 aa18.29■□□□□ 0.52
CLN3-262ENST00000637699 VN1R4Q7Z5H5 301 aa18.29■□□□□ 0.52
CLN3-262ENST00000637699 PNPLA5Q7Z6Z6 429 aaPredicted RBP18.29■□□□□ 0.52
CLN3-262ENST00000637699 SPC24Q8NBT2 197 aa18.29■□□□□ 0.52
CLN3-262ENST00000637699 M1APQ8TC57 530 aa18.29■□□□□ 0.52
CLN3-262ENST00000637699 MCOLN3Q8TDD5 553 aa18.29■□□□□ 0.52
CLN3-262ENST00000637699 FRMD6Q96NE9 622 aa18.29■□□□□ 0.52
CLN3-262ENST00000637699 SLC30A3Q99726 388 aa18.29■□□□□ 0.52
CLN3-262ENST00000637699 DESI2Q9BSY9 194 aa18.29■□□□□ 0.52
CLN3-262ENST00000637699 GTF3C1Q12789 2109 aa18.29■□□□□ 0.52
CLN3-262ENST00000637699 ASPDHA6ND91 283 aa18.28■□□□□ 0.52
CLN3-262ENST00000637699 GABRR3A8MPY1 467 aa18.28■□□□□ 0.52
CLN3-262ENST00000637699 AP3B1O00203 1094 aa18.28■□□□□ 0.52
CLN3-262ENST00000637699 ASNA1O43681 348 aa18.28■□□□□ 0.52
CLN3-262ENST00000637699 CYC1P08574 325 aa18.28■□□□□ 0.52
CLN3-262ENST00000637699 BCL6P41182 706 aa18.28■□□□□ 0.52
CLN3-262ENST00000637699 AGTR2P50052 363 aa18.28■□□□□ 0.52
CLN3-262ENST00000637699 HSF1Q00613 529 aa18.28■□□□□ 0.52
CLN3-262ENST00000637699 ACTN3Q08043 901 aaPredicted RBP18.28■□□□□ 0.52
CLN3-262ENST00000637699 CUL1Q13616 776 aa18.28■□□□□ 0.52
CLN3-262ENST00000637699 EXT1Q16394 746 aa18.28■□□□□ 0.52
CLN3-262ENST00000637699 KCTD19Q17RG1 926 aaPredicted RBP18.28■□□□□ 0.52
CLN3-262ENST00000637699 C3P1Q6ZMU1 363 aa18.28■□□□□ 0.52
CLN3-262ENST00000637699 LRRC56Q8IYG6 542 aaPredicted RBP18.28■□□□□ 0.52
CLN3-262ENST00000637699 TMEM178AQ8NBL3 297 aa18.28■□□□□ 0.52
CLN3-262ENST00000637699 ZCCHC10Q8TBK6 192 aa18.28■□□□□ 0.52
CLN3-262ENST00000637699 AGAP11Q8TF27 550 aa18.28■□□□□ 0.52
CLN3-262ENST00000637699 CHTF18Q8WVB6 975 aa18.28■□□□□ 0.52
CLN3-262ENST00000637699 MMP25Q9NPA2 562 aa18.28■□□□□ 0.52
CLN3-262ENST00000637699 MTORP42345 2549 aa18.28■□□□□ 0.52
CLN3-262ENST00000637699 NF1P21359 2839 aa18.28■□□□□ 0.52
CLN3-262ENST00000637699 SP1P08047 785 aa18.27■□□□□ 0.52
CLN3-262ENST00000637699 F7P08709 466 aaPredicted RBP18.27■□□□□ 0.52
CLN3-262ENST00000637699 OGNP20774 298 aaKnown RBP18.27■□□□□ 0.52
CLN3-262ENST00000637699 CAPN3P20807 821 aa18.27■□□□□ 0.52
CLN3-262ENST00000637699 CDC25BP30305 580 aa18.27■□□□□ 0.52
CLN3-262ENST00000637699 CLCN7P51798 805 aa18.27■□□□□ 0.52
CLN3-262ENST00000637699 RPS15AP62244 130 aaKnown RBP18.27■□□□□ 0.52
CLN3-262ENST00000637699 TLE4Q04727 773 aa18.27■□□□□ 0.52
CLN3-262ENST00000637699 TESK1Q15569 626 aa18.27■□□□□ 0.52
CLN3-262ENST00000637699 TTLL9Q3SXZ7 439 aa18.27■□□□□ 0.52
CLN3-262ENST00000637699 SFT2D3Q587I9 215 aa18.27■□□□□ 0.52
CLN3-262ENST00000637699 MEI1Q5TIA1 1274 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms