RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 GABRA4P48169 554 aa17.02■□□□□ 0.32
CLN3-247ENST00000636351 VSX2P58304 361 aaPredicted RBP17.02■□□□□ 0.32
CLN3-247ENST00000636351 ZXDCQ2QGD7 858 aaPredicted RBP17.02■□□□□ 0.32
CLN3-247ENST00000636351 TECRLQ5HYJ1 363 aa17.02■□□□□ 0.32
CLN3-247ENST00000636351 PRAMEF17Q5VTA0 474 aa17.02■□□□□ 0.32
CLN3-247ENST00000636351 ASB18Q6ZVZ8 466 aa17.02■□□□□ 0.32
CLN3-247ENST00000636351 RNF44Q7L0R7 432 aa17.02■□□□□ 0.32
CLN3-247ENST00000636351 TMPRSS11BQ86T26 416 aa17.02■□□□□ 0.32
CLN3-247ENST00000636351 ATCAYQ86WG3 371 aa17.02■□□□□ 0.32
CLN3-247ENST00000636351 ZNF655Q8N720 491 aaPredicted RBP17.02■□□□□ 0.32
CLN3-247ENST00000636351 ACMSDQ8TDX5 336 aa17.02■□□□□ 0.32
CLN3-247ENST00000636351 CT55Q8WUE5 264 aa17.02■□□□□ 0.32
CLN3-247ENST00000636351 SLC5A11Q8WWX8 675 aa17.02■□□□□ 0.32
CLN3-247ENST00000636351 RERGQ96A58 199 aaPredicted RBP17.02■□□□□ 0.32
CLN3-247ENST00000636351 CLIP3Q96DZ5 547 aa17.02■□□□□ 0.32
CLN3-247ENST00000636351 OR4K3Q96R72 315 aa17.02■□□□□ 0.32
CLN3-247ENST00000636351 TMEM79Q9BSE2 394 aa17.02■□□□□ 0.32
CLN3-247ENST00000636351 SPRTNQ9H040 489 aaPredicted RBP17.02■□□□□ 0.32
CLN3-247ENST00000636351 ACTR5Q9H9F9 607 aaPredicted RBP17.02■□□□□ 0.32
CLN3-247ENST00000636351 LHX9Q9NQ69 397 aa17.02■□□□□ 0.32
CLN3-247ENST00000636351 XPR1Q9UBH6 696 aa17.02■□□□□ 0.32
CLN3-247ENST00000636351 PADI1Q9ULC6 663 aa17.02■□□□□ 0.32
CLN3-247ENST00000636351 PCDHGA6Q9Y5G7 932 aa17.02■□□□□ 0.32
CLN3-247ENST00000636351 KCNE2Q9Y6J6 123 aa17.02■□□□□ 0.32
CLN3-247ENST00000636351 HEATR5BQ9P2D3 2071 aa17.01■□□□□ 0.31
CLN3-247ENST00000636351 ZNF749O43361 778 aa17.01■□□□□ 0.31
CLN3-247ENST00000636351 CCNT2O60583 730 aaKnown RBP17.01■□□□□ 0.31
CLN3-247ENST00000636351 EIF2S1P05198 315 aaKnown RBP17.01■□□□□ 0.31
CLN3-247ENST00000636351 CTSBP07858 339 aa17.01■□□□□ 0.31
CLN3-247ENST00000636351 ATXN8OSP0DMR3 200 aa17.01■□□□□ 0.31
CLN3-247ENST00000636351 PYGBP11216 843 aa17.01■□□□□ 0.31
CLN3-247ENST00000636351 NPPBP16860 134 aa17.01■□□□□ 0.31
CLN3-247ENST00000636351 GRK3P35626 688 aa17.01■□□□□ 0.31
CLN3-247ENST00000636351 SLC6A12P48065 614 aa17.01■□□□□ 0.31
CLN3-247ENST00000636351 KCNC1P48547 511 aa17.01■□□□□ 0.31
CLN3-247ENST00000636351 CD97P48960 835 aa17.01■□□□□ 0.31
CLN3-247ENST00000636351 CCR8P51685 355 aa17.01■□□□□ 0.31
CLN3-247ENST00000636351 ZNF425Q6IV72 752 aa17.01■□□□□ 0.31
CLN3-247ENST00000636351 PLD3Q8IV08 490 aa17.01■□□□□ 0.31
CLN3-247ENST00000636351 RIBC1Q8N443 379 aaPredicted RBP17.01■□□□□ 0.31
CLN3-247ENST00000636351 TTC29Q8NA56 475 aaPredicted RBP17.01■□□□□ 0.31
CLN3-247ENST00000636351 GPR78Q96P69 363 aa17.01■□□□□ 0.31
CLN3-247ENST00000636351 TMEM184CQ9NVA4 438 aa17.01■□□□□ 0.31
CLN3-247ENST00000636351 DNAJC11Q9NVH1 559 aa17.01■□□□□ 0.31
CLN3-247ENST00000636351 PTBP2Q9UKA9 531 aaKnown RBP17.01■□□□□ 0.31
CLN3-247ENST00000636351 USP9YO00507 2555 aaPredicted RBP17■□□□□ 0.31
CLN3-247ENST00000636351 TAPBPO15533 448 aa17■□□□□ 0.31
CLN3-247ENST00000636351 SMIM24O75264 130 aa17■□□□□ 0.31
CLN3-247ENST00000636351 STK16O75716 305 aa17■□□□□ 0.31
CLN3-247ENST00000636351 DNAJB5O75953 348 aa17■□□□□ 0.31
CLN3-247ENST00000636351 PDGFAP04085 211 aa17■□□□□ 0.31
CLN3-247ENST00000636351 CDC16Q13042 620 aa17■□□□□ 0.31
CLN3-247ENST00000636351 PFKFB4Q16877 469 aa17■□□□□ 0.31
CLN3-247ENST00000636351 TCTE1Q5JU00 501 aa17■□□□□ 0.31
CLN3-247ENST00000636351 FRMPD2BQ6IN97 320 aa17■□□□□ 0.31
CLN3-247ENST00000636351 TLDC1Q6P9B6 456 aa17■□□□□ 0.31
CLN3-247ENST00000636351 TBC1D19Q8N5T2 526 aa17■□□□□ 0.31
CLN3-247ENST00000636351 NEIL2Q969S2 332 aa17■□□□□ 0.31
CLN3-247ENST00000636351 ESAMQ96AP7 390 aa17■□□□□ 0.31
CLN3-247ENST00000636351 RUFY1Q96T51 708 aa17■□□□□ 0.31
CLN3-247ENST00000636351 NDC1Q9BTX1 674 aa17■□□□□ 0.31
CLN3-247ENST00000636351 MRPL46Q9H2W6 279 aaKnown RBP17■□□□□ 0.31
CLN3-247ENST00000636351 ACTL8Q9H568 366 aa17■□□□□ 0.31
CLN3-247ENST00000636351 TXLNGQ9NUQ3 528 aa17■□□□□ 0.31
CLN3-247ENST00000636351 SRPK3Q9UPE1 567 aa17■□□□□ 0.31
CLN3-247ENST00000636351 AP1M2Q9Y6Q5 423 aa17■□□□□ 0.31
CLN3-247ENST00000636351 A0A1W2PPM1 405 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 FEZF1A0PJY2 475 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 BLACEA4D250 179 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 FOXO6A8MYZ6 492 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 C21orf140B9A014 251 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 H0YGG7 62 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 HBQ1P09105 142 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 AGTR2P50052 363 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 ARF3P61204 181 aaPredicted RBP16.99■□□□□ 0.31
CLN3-247ENST00000636351 RPS15AP62244 130 aaKnown RBP16.99■□□□□ 0.31
CLN3-247ENST00000636351 CSNK1G2P78368 415 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 MEF2AQ02078 507 aaPredicted RBP16.99■□□□□ 0.31
CLN3-247ENST00000636351 GRM7Q14831 915 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 RASA2Q15283 850 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 PDK4Q16654 411 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 CATSPEREQ5SY80 951 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 LRRC70Q7Z2Q7 622 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 KLHDC8AQ8IYD2 350 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 CYP4X1Q8N118 509 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 CSNK1A1LQ8N752 337 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 MZB1Q8WU39 189 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 UBTD2Q8WUN7 234 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 MR1Q95460 341 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 PSMG3-AS1Q96PY0 264 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 MRPL57Q9BQC6 102 aaKnown RBP16.99■□□□□ 0.31
CLN3-247ENST00000636351 TRIM55Q9BYV6 548 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 AKIRIN1Q9H9L7 192 aaPredicted RBP16.99■□□□□ 0.31
CLN3-247ENST00000636351 PRM3Q9NNZ6 103 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 OPTCQ9UBM4 332 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 NDOR1Q9UHB4 597 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 ANGPTL3Q9Y5C1 460 aa16.99■□□□□ 0.31
CLN3-247ENST00000636351 USP9XQ93008 2570 aaPredicted RBP16.99■□□□□ 0.31
CLN3-247ENST00000636351 LOC105369274A0A096LPK9 316 aa16.98■□□□□ 0.31
CLN3-247ENST00000636351 LOC102723532A0A0G2JNH3 316 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms