RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 FKBP10Q96AY3 582 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 WBP1Q96G27 269 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 C10orf90Q96M02 699 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 ARHGAP9Q9BRR9 750 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 TMEM79Q9BSE2 394 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 ZNF304Q9HCX3 659 aa19.74■□□□□ 0.75
CLN3-240ENST00000631023 PSMC3IPQ9P2W1 217 aaPredicted RBP19.74■□□□□ 0.75
CLN3-240ENST00000631023 PIEZO2Q9H5I5 2752 aa19.73■□□□□ 0.75
CLN3-240ENST00000631023 CDC14CA4D256 554 aa19.73■□□□□ 0.75
CLN3-240ENST00000631023 UBXN8O00124 270 aa19.73■□□□□ 0.75
CLN3-240ENST00000631023 LCMT2O60294 686 aaKnown RBP19.73■□□□□ 0.75
CLN3-240ENST00000631023 RBP1P09455 135 aa19.73■□□□□ 0.75
CLN3-240ENST00000631023 GCAP28676 217 aa19.73■□□□□ 0.75
CLN3-240ENST00000631023 BCL6P41182 706 aa19.73■□□□□ 0.75
CLN3-240ENST00000631023 MEF2AQ02078 507 aaPredicted RBP19.73■□□□□ 0.75
CLN3-240ENST00000631023 FAM53BQ14153 422 aa19.73■□□□□ 0.75
CLN3-240ENST00000631023 UGT8Q16880 541 aa19.73■□□□□ 0.75
CLN3-240ENST00000631023 BORAQ6PGQ7 559 aa19.73■□□□□ 0.75
CLN3-240ENST00000631023 OVCH1Q7RTY7 1134 aa19.73■□□□□ 0.75
CLN3-240ENST00000631023 VN1R4Q7Z5H5 301 aa19.73■□□□□ 0.75
CLN3-240ENST00000631023 ASPGQ86U10 573 aa19.73■□□□□ 0.75
CLN3-240ENST00000631023 LSM14AQ8ND56 463 aaKnown RBP19.73■□□□□ 0.75
CLN3-240ENST00000631023 SLC13A3Q8WWT9 602 aa19.73■□□□□ 0.75
CLN3-240ENST00000631023 TTC9Q92623 222 aa19.73■□□□□ 0.75
CLN3-240ENST00000631023 EXTL1Q92935 676 aa19.73■□□□□ 0.75
CLN3-240ENST00000631023 COL26A1Q96A83 441 aa19.73■□□□□ 0.75
CLN3-240ENST00000631023 CD244Q9BZW8 370 aa19.73■□□□□ 0.75
CLN3-240ENST00000631023 SYNPO2LQ9H987 977 aa19.73■□□□□ 0.75
CLN3-240ENST00000631023 PPCSQ9HAB8 311 aa19.73■□□□□ 0.75
CLN3-240ENST00000631023 POLHQ9Y253 713 aa19.73■□□□□ 0.75
CLN3-240ENST00000631023 MAP2K7O14733 419 aa19.72■□□□□ 0.75
CLN3-240ENST00000631023 CLGNO14967 610 aa19.72■□□□□ 0.75
CLN3-240ENST00000631023 P2RX6O15547 441 aa19.72■□□□□ 0.75
CLN3-240ENST00000631023 PRPF4O43172 522 aaKnown RBP eCLIP19.72■□□□□ 0.75
CLN3-240ENST00000631023 SLC35G6P0C7Q6 338 aa19.72■□□□□ 0.75
CLN3-240ENST00000631023 OR1D4P47884 311 aa19.72■□□□□ 0.75
CLN3-240ENST00000631023 VSNL1P62760 191 aa19.72■□□□□ 0.75
CLN3-240ENST00000631023 NFKB2Q00653 900 aa19.72■□□□□ 0.75
CLN3-240ENST00000631023 TBR1Q16650 682 aa19.72■□□□□ 0.75
CLN3-240ENST00000631023 PDK4Q16654 411 aa19.72■□□□□ 0.75
CLN3-240ENST00000631023 WDR93Q6P2C0 686 aa19.72■□□□□ 0.75
CLN3-240ENST00000631023 TIFABQ6ZNK6 161 aa19.72■□□□□ 0.75
CLN3-240ENST00000631023 LRRC70Q7Z2Q7 622 aa19.72■□□□□ 0.75
CLN3-240ENST00000631023 METTL27Q8N6F8 245 aaPredicted RBP19.72■□□□□ 0.75
CLN3-240ENST00000631023 SNX31Q8N9S9 440 aa19.72■□□□□ 0.75
CLN3-240ENST00000631023 THAP4Q8WY91 577 aa19.72■□□□□ 0.75
CLN3-240ENST00000631023 TM4SF19Q96DZ7 209 aa19.72■□□□□ 0.75
CLN3-240ENST00000631023 GPR78Q96P69 363 aa19.72■□□□□ 0.75
CLN3-240ENST00000631023 DRC3Q9H069 523 aa19.72■□□□□ 0.75
CLN3-240ENST00000631023 PTRH2Q9Y3E5 179 aaKnown RBP19.72■□□□□ 0.75
CLN3-240ENST00000631023 MAU2Q9Y6X3 613 aa19.72■□□□□ 0.75
CLN3-240ENST00000631023 CCNT2O60583 730 aaKnown RBP19.71■□□□□ 0.75
CLN3-240ENST00000631023 MED26O95402 600 aa19.71■□□□□ 0.75
CLN3-240ENST00000631023 C1GALT1C1LP0DN25 315 aa19.71■□□□□ 0.75
CLN3-240ENST00000631023 GFAPP14136 432 aa19.71■□□□□ 0.75
CLN3-240ENST00000631023 AHRP35869 848 aa19.71■□□□□ 0.75
CLN3-240ENST00000631023 FOLR3P41439 243 aa19.71■□□□□ 0.75
CLN3-240ENST00000631023 CCR10P46092 362 aa19.71■□□□□ 0.75
CLN3-240ENST00000631023 DEFB109BQ30KR1 87 aa19.71■□□□□ 0.75
CLN3-240ENST00000631023 FBXO48Q5FWF7 155 aa19.71■□□□□ 0.75
CLN3-240ENST00000631023 ATP1A1-AS1Q5TC04 95 aa19.71■□□□□ 0.75
CLN3-240ENST00000631023 MRPL14Q6P1L8 145 aaKnown RBP19.71■□□□□ 0.75
CLN3-240ENST00000631023 SLCO4C1Q6ZQN7 724 aa19.71■□□□□ 0.75
CLN3-240ENST00000631023 PLD6Q8N2A8 252 aaKnown RBP19.71■□□□□ 0.75
CLN3-240ENST00000631023 ESAMQ96AP7 390 aa19.71■□□□□ 0.75
CLN3-240ENST00000631023 SCYL1Q96KG9 808 aa19.71■□□□□ 0.75
CLN3-240ENST00000631023 WDR54Q9H977 334 aa19.71■□□□□ 0.75
CLN3-240ENST00000631023 SLC22A11Q9NSA0 550 aa19.71■□□□□ 0.75
CLN3-240ENST00000631023 ZFP69BQ9UJL9 534 aa19.71■□□□□ 0.75
CLN3-240ENST00000631023 SCN2AQ99250 2005 aa19.71■□□□□ 0.75
CLN3-240ENST00000631023 KLF7O75840 302 aaPredicted RBP19.7■□□□□ 0.74
CLN3-240ENST00000631023 MTHFD2P13995 350 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 ITGAXP20702 1163 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 SCTRP47872 440 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 REEP5Q00765 189 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 PWP1Q13610 501 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 SSPNQ14714 243 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 TECRLQ5HYJ1 363 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 ATG9BQ674R7 924 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 KRT78Q8N1N4 520 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 ZNF740Q8NDX6 193 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 OR2Y1Q8NGV0 311 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 ZDHHC19Q8WVZ1 309 aaPredicted RBP19.7■□□□□ 0.74
CLN3-240ENST00000631023 APOBEC4Q8WW27 367 aaKnown RBP19.7■□□□□ 0.74
CLN3-240ENST00000631023 PITHD1Q9GZP4 211 aaPredicted RBP19.7■□□□□ 0.74
CLN3-240ENST00000631023 SLC26A1Q9H2B4 701 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 EHD1Q9H4M9 534 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 OPTCQ9UBM4 332 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 NXT1Q9UKK6 140 aaKnown RBP19.7■□□□□ 0.74
CLN3-240ENST00000631023 TMCO1Q9UM00 188 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 ATXN7O15265 892 aaPredicted RBP19.7■□□□□ 0.74
CLN3-240ENST00000631023 STATHP02808 62 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 FURINP09958 794 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 FBLP22087 321 aaKnown RBP19.7■□□□□ 0.74
CLN3-240ENST00000631023 VARSP26640 1264 aaKnown RBP19.7■□□□□ 0.74
CLN3-240ENST00000631023 AVPR1BP47901 424 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 ALDH18A1P54886 795 aaKnown RBP19.7■□□□□ 0.74
CLN3-240ENST00000631023 OCA2Q04671 838 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 RGS1Q08116 209 aa19.7■□□□□ 0.74
CLN3-240ENST00000631023 RBBP5Q15291 538 aaKnown RBP19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms