RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 LIPJQ5W064 366 aa18.85■□□□□ 0.61
UPF3A-211ENST00000618700 GRHL2Q6ISB3 625 aa18.85■□□□□ 0.61
UPF3A-211ENST00000618700 VN1R4Q7Z5H5 301 aa18.85■□□□□ 0.61
UPF3A-211ENST00000618700 BPHLQ86WA6 291 aaPredicted RBP18.85■□□□□ 0.61
UPF3A-211ENST00000618700 ANKRD53Q8N9V6 530 aa18.85■□□□□ 0.61
UPF3A-211ENST00000618700 MFSD9Q8NBP5 474 aa18.85■□□□□ 0.61
UPF3A-211ENST00000618700 DDA1Q9BW61 102 aa18.85■□□□□ 0.61
UPF3A-211ENST00000618700 NT5DC2Q9H857 520 aa18.85■□□□□ 0.61
UPF3A-211ENST00000618700 ACTR8Q9H981 624 aa18.85■□□□□ 0.61
UPF3A-211ENST00000618700 MLXIPLQ9NP71 852 aa18.85■□□□□ 0.61
UPF3A-211ENST00000618700 ZNF225Q9UK10 706 aa18.85■□□□□ 0.61
UPF3A-211ENST00000618700 RARRES3Q9UL19 164 aa18.85■□□□□ 0.61
UPF3A-211ENST00000618700 MSRB2Q9Y3D2 182 aa18.85■□□□□ 0.61
UPF3A-211ENST00000618700 PCDHGA3Q9Y5H0 932 aa18.85■□□□□ 0.61
UPF3A-211ENST00000618700 AKAP13Q12802 2813 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 LOC105369274A0A096LPK9 316 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 LOC102723532A0A0G2JNH3 316 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 H0YGG7 62 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 POLR1CO15160 346 aaPredicted RBP18.84■□□□□ 0.61
UPF3A-211ENST00000618700 OTCP00480 354 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 CXCR2P25025 360 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 HNF4AP41235 474 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 MAPK10P53779 464 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 ITGA1P56199 1179 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 ARF3P61204 181 aaPredicted RBP18.84■□□□□ 0.61
UPF3A-211ENST00000618700 PPP2R2AP63151 447 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 LAPTM5Q13571 262 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 LARP7Q4G0J3 582 aaKnown RBP eCLIP18.84■□□□□ 0.61
UPF3A-211ENST00000618700 GGTA1PQ4G0N0 100 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 PAGE2BQ5JRK9 111 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 HHATQ5VTY9 493 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 PPP1R3BQ86XI6 285 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 NUDCD3Q8IVD9 361 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 OR4N4Q8N0Y3 316 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 KRT78Q8N1N4 520 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 TBC1D19Q8N5T2 526 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 MGARPQ8TDB4 240 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 SREK1Q8WXA9 508 aaKnown RBP18.84■□□□□ 0.61
UPF3A-211ENST00000618700 N4BP2L2Q92802 583 aaPredicted RBP18.84■□□□□ 0.61
UPF3A-211ENST00000618700 TAAR9Q96RI9 348 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 TRMOQ9BU70 441 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 B3GNT4Q9C0J1 378 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 ANGPTL2Q9UKU9 493 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 STK38LQ9Y2H1 464 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 AP1M2Q9Y6Q5 423 aa18.84■□□□□ 0.61
UPF3A-211ENST00000618700 MDC1Q14676 2089 aaKnown RBP18.84■□□□□ 0.61
UPF3A-211ENST00000618700 WDFY3Q8IZQ1 3526 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 FITM1A5D6W6 292 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 C9orf172C9J069 976 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 H3BQF6 201 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 UBFD1O14562 309 aaKnown RBP18.83■□□□□ 0.6
UPF3A-211ENST00000618700 OR1F1O43749 312 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 NPHS1O60500 1241 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 H2AFYO75367 372 aaKnown RBP18.83■□□□□ 0.6
UPF3A-211ENST00000618700 DXOO77932 396 aaKnown RBP18.83■□□□□ 0.6
UPF3A-211ENST00000618700 TNFSF15O95150 251 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 TIAF1O95411 115 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 CLDN9O95484 217 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 AHRP35869 848 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 CCR10P46092 362 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 PKNOX1P55347 436 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 ERVPABLB-1P60509 514 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 RBBP7Q16576 425 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 PRTGQ2VWP7 1150 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 CES4AQ5XG92 561 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 LETMD1Q6P1Q0 360 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 FOXR1Q6PIV2 292 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 TMIGD1Q6UXZ0 262 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 ZCCHC23Q6ZST2 131 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP18.83■□□□□ 0.6
UPF3A-211ENST00000618700 LAS2Q8IYD9 372 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 OR4F6Q8NGB9 312 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 AGAP11Q8TF27 550 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 ATP6V1E2Q96A05 226 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 NXPE2Q96DL1 559 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 SLC46A1Q96NT5 459 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 CDK15Q96Q40 435 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 TEFMQ96QE5 360 aaKnown RBP18.83■□□□□ 0.6
UPF3A-211ENST00000618700 CTRCQ99895 268 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 ASCL3Q9NQ33 180 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 TRPS1Q9UHF7 1281 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 ZFP69BQ9UJL9 534 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 SERTAD3Q9UJW9 196 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 ZNF490Q9ULM2 529 aaPredicted RBP18.83■□□□□ 0.6
UPF3A-211ENST00000618700 RNF11Q9Y3C5 154 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 B3GALT1Q9Y5Z6 326 aa18.83■□□□□ 0.6
UPF3A-211ENST00000618700 WDR91A4D1P6 747 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 P2RX6O15547 441 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 OR2B3O76000 313 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 SERPINE1P05121 402 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 GSTM2P28161 218 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 SERPINB5P36952 375 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 GCGRP47871 477 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 VSX2P58304 361 aaPredicted RBP18.82■□□□□ 0.6
UPF3A-211ENST00000618700 RCN2Q14257 317 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 HSP90B2PQ58FF3 399 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 TCTE1Q5JU00 501 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 DCAF12Q5T6F0 453 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 MED27Q6P2C8 311 aa18.82■□□□□ 0.6
UPF3A-211ENST00000618700 CEACAM20Q6UY09 585 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms