RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 RPUSD3Q6P087 351 aaKnown RBP16.64■□□□□ 0.25
SHKBP1-223ENST00000600552 TMEM205Q6UW68 189 aa16.64■□□□□ 0.25
SHKBP1-223ENST00000600552 LRRC56Q8IYG6 542 aaPredicted RBP16.64■□□□□ 0.25
SHKBP1-223ENST00000600552 AGGF1Q8N302 714 aaeCLIP16.64■□□□□ 0.257e-20■■■■□ 22.6
SHKBP1-223ENST00000600552 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.64■□□□□ 0.25
SHKBP1-223ENST00000600552 FBXO15Q8NCQ5 510 aaPredicted RBP16.64■□□□□ 0.25
SHKBP1-223ENST00000600552 OR51Q1Q8NH59 317 aa16.64■□□□□ 0.25
SHKBP1-223ENST00000600552 PBKQ96KB5 322 aa16.64■□□□□ 0.25
SHKBP1-223ENST00000600552 CYTH2Q99418 400 aa16.64■□□□□ 0.25
SHKBP1-223ENST00000600552 SLX1AQ9BQ83 275 aa16.64■□□□□ 0.25
SHKBP1-223ENST00000600552 RBCK1Q9BYM8 510 aa16.64■□□□□ 0.25
SHKBP1-223ENST00000600552 VN1R1Q9GZP7 353 aa16.64■□□□□ 0.25
SHKBP1-223ENST00000600552 KLHL42Q9P2K6 505 aa16.64■□□□□ 0.25
SHKBP1-223ENST00000600552 MYO9AB2RTY4 2548 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 A0A1B0GUH1 482 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 ZNF860A6NHJ4 632 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 PRSS44E7EML9 344 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 NRDCO43847 1150 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 BANF1O75531 89 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 UNC5CO95185 931 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 SERPIND1P05546 499 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 ICAM2P13598 275 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 SKIV2L2P42285 1042 aaKnown RBP16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 RPS15AP62244 130 aaKnown RBP16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 CCZ1BP86790 482 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 CCZ1P86791 482 aaPredicted RBP16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 PMP22Q01453 160 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 ACTN3Q08043 901 aaPredicted RBP16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 PPP1R7Q15435 360 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 SP5Q6BEB4 398 aaPredicted RBP16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 RIPOR1Q6ZS17 1223 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 VN1R4Q7Z5H5 301 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 CPEB2Q7Z5Q1 589 aaKnown RBP16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 C17orf64Q86WR6 236 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 ARHGEF39Q8N4T4 335 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 KCT2Q8NC54 265 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 NR4A3Q92570 626 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 SIGLEC10Q96LC7 697 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 CCDC138Q96M89 665 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 FAM167BQ9BTA0 163 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 TUBB6Q9BUF5 446 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 KCNK13Q9HB14 408 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 ANKHQ9HCJ1 492 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 TEKT2Q9UIF3 430 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 PDE10AQ9Y233 779 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 COMMD10Q9Y6G5 202 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 CELSR2Q9HCU4 2923 aa16.63■□□□□ 0.25
SHKBP1-223ENST00000600552 LOC102723996A0A087X1L8 192 aa16.62■□□□□ 0.25
SHKBP1-223ENST00000600552 PABPN1LA6NDY0 278 aaKnown RBP16.62■□□□□ 0.25
SHKBP1-223ENST00000600552 RDH16O75452 317 aa16.62■□□□□ 0.25
SHKBP1-223ENST00000600552 CDC123O75794 336 aaPredicted RBP16.62■□□□□ 0.25
SHKBP1-223ENST00000600552 RASAL1O95294 804 aa16.62■□□□□ 0.25
SHKBP1-223ENST00000600552 CDH1P12830 882 aa16.62■□□□□ 0.25
SHKBP1-223ENST00000600552 BCL6P41182 706 aa16.62■□□□□ 0.25
SHKBP1-223ENST00000600552 RGS4P49798 205 aa16.62■□□□□ 0.25
SHKBP1-223ENST00000600552 CSNK1G2P78368 415 aa16.62■□□□□ 0.25
SHKBP1-223ENST00000600552 MEF2AQ02078 507 aaPredicted RBP16.62■□□□□ 0.25
SHKBP1-223ENST00000600552 PTK6Q13882 451 aa16.62■□□□□ 0.25
SHKBP1-223ENST00000600552 ARMC3Q5W041 872 aa16.62■□□□□ 0.25
SHKBP1-223ENST00000600552 UGT3A1Q6NUS8 523 aa16.62■□□□□ 0.25
SHKBP1-223ENST00000600552 AGTRAPQ6RW13 159 aa16.62■□□□□ 0.25
SHKBP1-223ENST00000600552 TMEM207Q6UWW9 146 aa16.62■□□□□ 0.25
SHKBP1-223ENST00000600552 SLC26A11Q86WA9 606 aa16.62■□□□□ 0.25
SHKBP1-223ENST00000600552 MYO1HQ8N1T3 1032 aa16.62■□□□□ 0.25
SHKBP1-223ENST00000600552 CAMKVQ8NCB2 501 aa16.62■□□□□ 0.25
SHKBP1-223ENST00000600552 IMMP1LQ96LU5 166 aa16.62■□□□□ 0.25
SHKBP1-223ENST00000600552 PPANQ9NQ55 473 aaKnown RBP16.62■□□□□ 0.25
SHKBP1-223ENST00000600552 ANKRD10Q9NXR5 420 aa16.62■□□□□ 0.25
SHKBP1-223ENST00000600552 COPG2Q9UBF2 871 aa16.62■□□□□ 0.25
SHKBP1-223ENST00000600552 OR5H15A6NDH6 313 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 FAM227AF5H4B4 570 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 H0YIG0 161 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 PGRMC1O00264 195 aaKnown RBP16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 PCDH17O14917 1159 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 LCMT2O60294 686 aaKnown RBP16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 PRAMEF2O60811 474 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 NSA2O95478 260 aaKnown RBP16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 STSP08842 583 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 MYBL2P10244 700 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 HRH2P25021 359 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 MST1P26927 711 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 GRK3P35626 688 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 PGGT1BP53609 377 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 AP2B1P63010 937 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 RELAQ04206 551 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 HP1BP3Q5SSJ5 553 aaPredicted RBP16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 RBM20Q5T481 1227 aaKnown RBP16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 PAQR3Q6TCH7 311 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 ASPGQ86U10 573 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 LMNTD2Q8IXW0 634 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 PPIL6Q8IXY8 311 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 RASGEF1CQ8N431 466 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 NAT8LQ8N9F0 302 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 SLC13A3Q8WWT9 602 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 MARVELD3Q96A59 401 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 LINGO1Q96FE5 620 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 PEX11GQ96HA9 241 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 NAP1L3Q99457 506 aaPredicted RBP16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 PCBD2Q9H0N5 130 aa16.61■□□□□ 0.25
SHKBP1-223ENST00000600552 PARVBQ9HBI1 364 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms