RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 NOXRED1Q6NXP6 359 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 CHERPQ8IWX8 916 aaKnown RBP19.88■□□□□ 0.77
UPF1-207ENST00000599848 FKBP10Q96AY3 582 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 PTCHD1Q96NR3 888 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 ORAI3Q9BRQ5 295 aa19.88■□□□□ 0.77
UPF1-207ENST00000599848 HSD17B7P56937 341 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 CHAF1BQ13112 559 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 RNF19BQ6ZMZ0 732 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 IQCHQ86VS3 1027 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 SAGE1Q9NXZ1 904 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 GRHPRQ9UBQ7 328 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 TESMINQ9Y4I5 508 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 PHLPP1O60346 1717 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 M0R129 80 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 OR2B3O76000 313 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 CLRN1P58418 232 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 CRELD2Q6UXH1 353 aaPredicted RBP19.87■□□□□ 0.77
UPF1-207ENST00000599848 OR10Q1Q8NGQ4 319 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 OR13C4Q8NGS5 318 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 STOML2Q9UJZ1 356 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 CAPN5O15484 640 aaPredicted RBP19.87■□□□□ 0.77
UPF1-207ENST00000599848 HSPA12AO43301 675 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 RAB36O95755 333 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 H1F0P07305 194 aaKnown RBP19.87■□□□□ 0.77
UPF1-207ENST00000599848 RAP2AP10114 183 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 TNFRSF4P43489 277 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 VEGFBP49765 207 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 DSC1Q08554 894 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 TMEM115Q12893 351 aaPredicted RBP19.87■□□□□ 0.77
UPF1-207ENST00000599848 MALLQ13021 153 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 MELKQ14680 651 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 SPPL2CQ8IUH8 684 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 DEFB119Q8N690 84 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 GABRQQ9UN88 632 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 CLDN7O95471 211 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 EIF2B2P49770 351 aaKnown RBP19.87■□□□□ 0.77
UPF1-207ENST00000599848 E2F2Q14209 437 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 CLEC6AQ6EIG7 209 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 NAT6Q93015 286 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 MNTQ99583 582 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 MINDY3Q9H8M7 445 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 ABCB10Q9NRK6 738 aa19.87■□□□□ 0.77
UPF1-207ENST00000599848 WBP11Q9Y2W2 641 aaKnown RBP19.87■□□□□ 0.77
UPF1-207ENST00000599848 A0A1W2PQU0 124 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 ALDOAP04075 364 aaKnown RBP19.86■□□□□ 0.77
UPF1-207ENST00000599848 GALK1P51570 392 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 TMEM225Q6GV28 225 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 C1orf52Q8N6N3 182 aaKnown RBP19.86■□□□□ 0.77
UPF1-207ENST00000599848 GATAD2BQ8WXI9 593 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 A0A1W2PRQ8 180 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 KLK1P06870 262 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 CTSAP10619 480 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 BMP4P12644 408 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 RBM34P42696 430 aaKnown RBP19.86■□□□□ 0.77
UPF1-207ENST00000599848 SMSP52788 366 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 FUKQ8N0W3 1084 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 OR10A6Q8NH74 314 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 TCEAL3Q969E4 200 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 TMEM109Q9BVC6 243 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 NOCTQ9UK39 431 aaKnown RBP19.86■□□□□ 0.77
UPF1-207ENST00000599848 SLC7A11Q9UPY5 501 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 PEX16Q9Y5Y5 336 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 CCL22O00626 93 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 PPM1BO75688 479 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 TAS2R43P59537 309 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 PAFAH1B3Q15102 231 aaKnown RBP19.86■□□□□ 0.77
UPF1-207ENST00000599848 SREK1IP1Q8N9Q2 155 aaPredicted RBP19.86■□□□□ 0.77
UPF1-207ENST00000599848 OR52J3Q8NH60 311 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 MSANTD3Q96H12 275 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 LRRC3Q9BY71 257 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 MAGEE1Q9HCI5 957 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 UBE2NP61088 152 aaKnown RBP19.86■□□□□ 0.77
UPF1-207ENST00000599848 ZNF267Q14586 743 aaPredicted RBP19.86■□□□□ 0.77
UPF1-207ENST00000599848 FASTKD3Q14CZ7 662 aaKnown RBP19.86■□□□□ 0.77
UPF1-207ENST00000599848 DUOXA1Q1HG43 343 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 SLC39A4Q6P5W5 647 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 TSEN2Q8NCE0 465 aaKnown RBP19.86■□□□□ 0.77
UPF1-207ENST00000599848 GRHL3Q8TE85 626 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 RHBDD1Q8TEB9 315 aa19.86■□□□□ 0.77
UPF1-207ENST00000599848 GATA5Q9BWX5 397 aaPredicted RBP19.86■□□□□ 0.77
UPF1-207ENST00000599848 A0A1W2PPM1 405 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 ZNF487B1APH4 448 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 LPLP06858 475 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 CXCL12P48061 93 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 NIPAL4Q0D2K0 466 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 SIM2Q14190 667 aaPredicted RBP19.85■□□□□ 0.77
UPF1-207ENST00000599848 CD180Q99467 661 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 MECRQ9BV79 373 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 NLGN3Q9NZ94 848 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 NID2Q14112 1375 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 NADKO95544 446 aaPredicted RBP19.85■□□□□ 0.77
UPF1-207ENST00000599848 PGCP20142 388 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 BDKRB1P46663 353 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 ARL5BQ96KC2 179 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 LPAR4Q99677 370 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 DERL2Q9GZP9 239 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 TVP23BQ9NYZ1 205 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 SLC17A7Q9P2U7 560 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 SPEF1Q9Y4P9 236 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 CFHP08603 1231 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms