RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 IL1RNP18510 177 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 SOX11P35716 441 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 XCR1P46094 333 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 TNFSF10P50591 281 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 PDAP1Q13442 181 aaKnown RBP9.28□□□□□ -0.92
VRK3-216ENST00000599342 NAE1Q13564 534 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 PCOLCEQ15113 449 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 ABHD17BQ5VST6 288 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 CAPN13Q6MZZ7 669 aaPredicted RBP9.28□□□□□ -0.92
VRK3-216ENST00000599342 AGTRAPQ6RW13 159 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 PAQR3Q6TCH7 311 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 TMEM205Q6UW68 189 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 MBOAT1Q6ZNC8 495 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 KIAA0408Q6ZU52 694 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 VN1R4Q7Z5H5 301 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 ASPGQ86U10 573 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 CNTN4Q8IWV2 1026 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 OR51Q1Q8NH59 317 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 ZCCHC10Q8TBK6 192 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 HAS2Q92819 552 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 LINGO1Q96FE5 620 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 CERS2Q96G23 380 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 HAUS8Q9BT25 410 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 TUBB6Q9BUF5 446 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 TRIM54Q9BYV2 358 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 VN1R1Q9GZP7 353 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 ZNF700Q9H0M5 742 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 DDX47Q9H0S4 455 aaKnown RBP9.28□□□□□ -0.92
VRK3-216ENST00000599342 ANKHQ9HCJ1 492 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 HCN3Q9P1Z3 774 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 TEKT2Q9UIF3 430 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 ADAMTS6Q9UKP5 1117 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 OSGIN2Q9Y236 505 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 SGK494L7N484 410 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 LRRTM2O43300 516 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 CLDN1O95832 211 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 F10P00742 488 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 CELA2AP08217 269 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 ITGAMP11215 1152 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 CDH1P12830 882 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 TCP1P17987 556 aaKnown RBP9.27□□□□□ -0.93
VRK3-216ENST00000599342 BCL6P41182 706 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 AGTR2P50052 363 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 CDKN2DP55273 166 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 IL2P60568 153 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 SKP1P63208 163 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 CSNK1G2P78368 415 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 ZNF33BQ06732 778 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 BTBD16Q32M84 506 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 BBS9Q3SYG4 887 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 RBM20Q5T481 1227 aaKnown RBP9.27□□□□□ -0.93
VRK3-216ENST00000599342 TMEM214Q6NUQ4 689 aaKnown RBP9.27□□□□□ -0.93
VRK3-216ENST00000599342 HIBCHQ6NVY1 386 aaPredicted RBP9.27□□□□□ -0.93
VRK3-216ENST00000599342 LCTLQ6UWM7 567 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 PRSS41Q7RTY9 318 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 CPEB2Q7Z5Q1 589 aaKnown RBP9.27□□□□□ -0.93
VRK3-216ENST00000599342 GALNT7Q86SF2 657 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 PDIK1LQ8N165 341 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 TBC1D19Q8N5T2 526 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 GPATCH11Q8N954 259 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 SLC13A3Q8WWT9 602 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 PSMF1Q92530 271 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 CFAP36Q96G28 342 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 MACROD1Q9BQ69 325 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 SLX1AQ9BQ83 275 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 ARL15Q9NXU5 204 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 PLA2G3Q9NZ20 509 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 CORO1CQ9ULV4 474 aaPredicted RBP9.27□□□□□ -0.93
VRK3-216ENST00000599342 SH2B3Q9UQQ2 575 aa9.27□□□□□ -0.93
VRK3-216ENST00000599342 IGHV3-20A0A0C4DH32 117 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 A0A1B0GUH1 482 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 OR5H15A6NDH6 313 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 NDUFS4O43181 175 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 RDH16O75452 317 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 JRKO75564 520 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 SEC24DO94855 1032 aaPredicted RBP9.26□□□□□ -0.93
VRK3-216ENST00000599342 RASAL1O95294 804 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 WDPCPO95876 746 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 AHSGP02765 367 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 ENO2P09104 434 aaPredicted RBP9.26□□□□□ -0.93
VRK3-216ENST00000599342 COL8A1P27658 744 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 GABRB3P28472 473 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 CCR8P51685 355 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 AP1S2P56377 157 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 TIAL1Q01085 375 aaKnown RBP eCLIP9.26□□□□□ -0.93
VRK3-216ENST00000599342 MORF4L2Q15014 288 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 HERC3Q15034 1050 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 PHKG1Q16816 387 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 MSS51Q4VC12 460 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 HECTD2Q5U5R9 776 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 DUPD1Q68J44 220 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 PLAG1Q6DJT9 500 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 FAM45BPQ6NSW5 357 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 LANCL3Q6ZV70 420 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 SYDE1Q6ZW31 735 aaPredicted RBP9.26□□□□□ -0.93
VRK3-216ENST00000599342 SLC26A11Q86WA9 606 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 MFSD9Q8NBP5 474 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 KCT2Q8NC54 265 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 FAM45AQ8TCE6 357 aa9.26□□□□□ -0.93
VRK3-216ENST00000599342 ATL1Q8WXF7 558 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms