RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 C19orf60Q96EN9 201 aa14.3□□□□□ -0.12
LIG1-215ENST00000597901 DPH5Q9H2P9 285 aa14.3□□□□□ -0.12
LIG1-215ENST00000597901 ZNF160Q9HCG1 818 aa14.3□□□□□ -0.12
LIG1-215ENST00000597901 WHRNQ9P202 907 aa14.3□□□□□ -0.12
LIG1-215ENST00000597901 TNRC6AQ8NDV7 1962 aaKnown RBP14.3□□□□□ -0.12
LIG1-215ENST00000597901 FAM95CA0A1B0GW59 222 aa14.29□□□□□ -0.12
LIG1-215ENST00000597901 PABPN1LA6NDY0 278 aaKnown RBP14.29□□□□□ -0.12
LIG1-215ENST00000597901 H0YIG0 161 aa14.29□□□□□ -0.12
LIG1-215ENST00000597901 MAP2K7O14733 419 aa14.29□□□□□ -0.12
LIG1-215ENST00000597901 BMP10O95393 424 aa14.29□□□□□ -0.12
LIG1-215ENST00000597901 ENO2P09104 434 aaPredicted RBP14.29□□□□□ -0.12
LIG1-215ENST00000597901 GRK3P35626 688 aa14.29□□□□□ -0.12
LIG1-215ENST00000597901 BCL6P41182 706 aa14.29□□□□□ -0.12
LIG1-215ENST00000597901 UQCRFS1P47985 274 aa14.29□□□□□ -0.12
LIG1-215ENST00000597901 CCR8P51685 355 aa14.29□□□□□ -0.12
LIG1-215ENST00000597901 CRB2Q5IJ48 1285 aa14.29□□□□□ -0.12
LIG1-215ENST00000597901 FAAH2Q6GMR7 532 aa14.29□□□□□ -0.12
LIG1-215ENST00000597901 TMEM214Q6NUQ4 689 aaKnown RBP14.29□□□□□ -0.12
LIG1-215ENST00000597901 ASPGQ86U10 573 aa14.29□□□□□ -0.12
LIG1-215ENST00000597901 IQCKQ8N0W5 287 aa14.29□□□□□ -0.12
LIG1-215ENST00000597901 C17orf53Q8N3J3 647 aaPredicted RBP14.29□□□□□ -0.12
LIG1-215ENST00000597901 NKAPQ8N5F7 415 aaKnown RBP14.29□□□□□ -0.12
LIG1-215ENST00000597901 MFSD9Q8NBP5 474 aa14.29□□□□□ -0.12
LIG1-215ENST00000597901 KCT2Q8NC54 265 aa14.29□□□□□ -0.12
LIG1-215ENST00000597901 ABHD11Q8NFV4 315 aa14.29□□□□□ -0.12
LIG1-215ENST00000597901 SLC13A3Q8WWT9 602 aa14.29□□□□□ -0.12
LIG1-215ENST00000597901 ANKRD7Q92527 254 aa14.29□□□□□ -0.12
LIG1-215ENST00000597901 SNRNP40Q96DI7 357 aaKnown RBP14.29□□□□□ -0.12
LIG1-215ENST00000597901 OR4K3Q96R72 315 aa14.29□□□□□ -0.12
LIG1-215ENST00000597901 LMF1Q96S06 567 aa14.29□□□□□ -0.12
LIG1-215ENST00000597901 FAM129AQ9BZQ8 928 aa14.29□□□□□ -0.12
LIG1-215ENST00000597901 SMYD2Q9NRG4 433 aa14.29□□□□□ -0.12
LIG1-215ENST00000597901 C14orf105Q9NVL8 296 aa14.29□□□□□ -0.12
LIG1-215ENST00000597901 MAP10Q9P2G4 905 aa14.29□□□□□ -0.12
LIG1-215ENST00000597901 NOVA2Q9UNW9 492 aaKnown RBP14.29□□□□□ -0.12
LIG1-215ENST00000597901 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.29□□□□□ -0.12
LIG1-215ENST00000597901 NSG1A0A0A6YYJ2 146 aa14.28□□□□□ -0.12
LIG1-215ENST00000597901 TCP11X1B4DZS4 312 aa14.28□□□□□ -0.12
LIG1-215ENST00000597901 CDC7O00311 574 aa14.28□□□□□ -0.12
LIG1-215ENST00000597901 RAD51CO43502 376 aa14.28□□□□□ -0.12
LIG1-215ENST00000597901 PIAS1O75925 651 aa14.28□□□□□ -0.12
LIG1-215ENST00000597901 KLHL18O94889 574 aa14.28□□□□□ -0.12
LIG1-215ENST00000597901 UBR5O95071 2799 aaPredicted RBP14.28□□□□□ -0.12
LIG1-215ENST00000597901 NSA2O95478 260 aaKnown RBP14.28□□□□□ -0.12
LIG1-215ENST00000597901 COX6A1P12074 109 aa14.28□□□□□ -0.12
LIG1-215ENST00000597901 SSTR1P30872 391 aa14.28□□□□□ -0.12
LIG1-215ENST00000597901 GLRBP48167 497 aa14.28□□□□□ -0.12
LIG1-215ENST00000597901 ETF1P62495 437 aaKnown RBP14.28□□□□□ -0.12
LIG1-215ENST00000597901 CALCOCO2Q13137 446 aa14.28□□□□□ -0.12
LIG1-215ENST00000597901 TMEM205Q6UW68 189 aa14.28□□□□□ -0.12
LIG1-215ENST00000597901 SBSNQ6UWP8 590 aa14.28□□□□□ -0.12
LIG1-215ENST00000597901 CUZD1Q86UP6 607 aa14.28□□□□□ -0.12
LIG1-215ENST00000597901 ZC3H7AQ8IWR0 971 aaKnown RBP14.28□□□□□ -0.12
LIG1-215ENST00000597901 KBTBD2Q8IY47 623 aa14.28□□□□□ -0.12
LIG1-215ENST00000597901 SHISA5Q8N114 240 aa14.28□□□□□ -0.12
LIG1-215ENST00000597901 OR51Q1Q8NH59 317 aa14.28□□□□□ -0.12
LIG1-215ENST00000597901 DNAJB14Q8TBM8 379 aa14.28□□□□□ -0.12
LIG1-215ENST00000597901 MCMBPQ9BTE3 642 aa14.28□□□□□ -0.12
LIG1-215ENST00000597901 SARGQ9BW04 601 aa14.28□□□□□ -0.12
LIG1-215ENST00000597901 ILKAPQ9H0C8 392 aaPredicted RBP14.28□□□□□ -0.12
LIG1-215ENST00000597901 SAYSD1Q9NPB0 183 aa14.28□□□□□ -0.12
LIG1-215ENST00000597901 ASF1BQ9NVP2 202 aa14.28□□□□□ -0.12
LIG1-215ENST00000597901 NSMCE4AQ9NXX6 385 aa14.28□□□□□ -0.12
LIG1-215ENST00000597901 CCDC88CQ9P219 2028 aa14.28□□□□□ -0.12
LIG1-215ENST00000597901 MKL2Q9ULH7 1088 aa14.28□□□□□ -0.12
LIG1-215ENST00000597901 MTO1Q9Y2Z2 717 aaKnown RBP14.28□□□□□ -0.12
LIG1-215ENST00000597901 LOC102723996A0A087X1L8 192 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 IGHV1-45A0A0A0MS14 117 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 A0A1W2PQ72 361 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 CXorf49A8MYA2 514 aaPredicted RBP14.27□□□□□ -0.13
LIG1-215ENST00000597901 SGK494L7N484 410 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 PCDH17O14917 1159 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 EIF3HO15372 352 aaKnown RBP eCLIP14.27□□□□□ -0.13
LIG1-215ENST00000597901 OR1F1O43749 312 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 JRKO75564 520 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 ZNF37AP17032 561 aaPredicted RBP14.27□□□□□ -0.13
LIG1-215ENST00000597901 EFNA3P52797 238 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 MEF2AQ02078 507 aaPredicted RBP14.27□□□□□ -0.13
LIG1-215ENST00000597901 EEF1A2Q05639 463 aaKnown RBP14.27□□□□□ -0.13
LIG1-215ENST00000597901 C2orf54Q08AI8 447 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 CSHL1Q14406 222 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 ZNF460Q14592 562 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 PPP1R3AQ16821 1122 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 CATSPEREQ5SY80 951 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 FHL5Q5TD97 284 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 ISLR2Q6UXK2 745 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 SYT10Q6XYQ8 523 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 LINC00696Q6ZRV3 163 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 CAPN12Q6ZSI9 719 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 C3orf62Q6ZUJ4 267 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 CYS1Q717R9 158 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 PRSS41Q7RTY9 318 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 CEP97Q8IW35 865 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 ANKRD49Q8WVL7 239 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 PSMF1Q92530 271 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 VPS39Q96JC1 886 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 CYTH2Q99418 400 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 WDR77Q9BQA1 342 aaPredicted RBP14.27□□□□□ -0.13
LIG1-215ENST00000597901 RHOJQ9H4E5 214 aa14.27□□□□□ -0.13
LIG1-215ENST00000597901 ANKHQ9HCJ1 492 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms