RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 TMEM126BQ8IUX1 230 aa12.35□□□□□ -0.43
SCAF1-202ENST00000595242 MMP21Q8N119 569 aa12.35□□□□□ -0.43
SCAF1-202ENST00000595242 ZADH2Q8N4Q0 377 aa12.35□□□□□ -0.43
SCAF1-202ENST00000595242 SLC7A6OSQ96CW6 309 aaPredicted RBP12.35□□□□□ -0.43
SCAF1-202ENST00000595242 PTCD3Q96EY7 689 aaKnown RBP12.35□□□□□ -0.43
SCAF1-202ENST00000595242 SLC41A2Q96JW4 573 aa12.35□□□□□ -0.43
SCAF1-202ENST00000595242 ZNF514Q96K75 400 aaPredicted RBP12.35□□□□□ -0.43
SCAF1-202ENST00000595242 MCCC1Q96RQ3 725 aaPredicted RBP12.35□□□□□ -0.43
SCAF1-202ENST00000595242 RIOK2Q9BVS4 552 aaKnown RBP12.35□□□□□ -0.43
SCAF1-202ENST00000595242 NLNQ9BYT8 704 aa12.35□□□□□ -0.43
SCAF1-202ENST00000595242 OSGEPL1Q9H4B0 414 aa12.35□□□□□ -0.43
SCAF1-202ENST00000595242 RMI1Q9H9A7 625 aa12.35□□□□□ -0.43
SCAF1-202ENST00000595242 CHST11Q9NPF2 352 aa12.35□□□□□ -0.43
SCAF1-202ENST00000595242 CPSF2Q9P2I0 782 aaKnown RBP12.35□□□□□ -0.43
SCAF1-202ENST00000595242 PPIL1Q9Y3C6 166 aa12.35□□□□□ -0.43
SCAF1-202ENST00000595242 COMMD10Q9Y6G5 202 aa12.35□□□□□ -0.43
SCAF1-202ENST00000595242 MAP1AP78559 2803 aaPredicted RBP12.34□□□□□ -0.43
SCAF1-202ENST00000595242 A0A0J9YYE9 177 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 CAPN14A8MX76 684 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 SLCO1B7G3V0H7 640 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 PFDN6O15212 129 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 STX7O15400 261 aaKnown RBP12.34□□□□□ -0.43
SCAF1-202ENST00000595242 HSPA4LO95757 839 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 TRBC1P01850 177 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 STSP08842 583 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 ZNF37AP17032 561 aaPredicted RBP12.34□□□□□ -0.43
SCAF1-202ENST00000595242 BPIP17213 487 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 TTPAP49638 278 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 PGGT1BP53609 377 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 PPP1CAP62136 330 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 GALNT1Q10472 559 aaPredicted RBP12.34□□□□□ -0.43
SCAF1-202ENST00000595242 PRKAA1Q13131 559 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 RIPK1Q13546 671 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 CSHL1Q14406 222 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 MYBPC3Q14896 1274 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 TMEM207Q6UWW9 146 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 CERS6Q6ZMG9 384 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 USP45Q70EL2 814 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 ZNF765Q7L2R6 523 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 LDB1Q86U70 411 aaPredicted RBP12.34□□□□□ -0.43
SCAF1-202ENST00000595242 SLC22A9Q8IVM8 553 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 KIRREL3Q8IZU9 778 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 NXPE1Q8N323 547 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 RHEBL1Q8TAI7 183 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 GRHL3Q8TE85 626 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 ANKRD49Q8WVL7 239 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 TM9SF4Q92544 642 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 NMUR2Q9GZQ4 415 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 RAB33BQ9H082 229 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 ZNF552Q9H707 407 aaPredicted RBP12.34□□□□□ -0.43
SCAF1-202ENST00000595242 KLC4Q9NSK0 619 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 PNPOQ9NVS9 261 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 SEMA5BQ9P283 1151 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 MARCOQ9UEW3 520 aaPredicted RBP12.34□□□□□ -0.43
SCAF1-202ENST00000595242 EPHA6Q9UF33 1036 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 FKBPLQ9UIM3 349 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 CNOT6Q9ULM6 557 aaKnown RBP12.34□□□□□ -0.43
SCAF1-202ENST00000595242 MED16Q9Y2X0 877 aa12.34□□□□□ -0.43
SCAF1-202ENST00000595242 TRBV5-4A0A0C4DH59 114 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 A8MT66 165 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 F8W8V4 182 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 MEN1O00255 615 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 GRID2O43424 1007 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 PRICKLE3O43900 615 aaPredicted RBP12.33□□□□□ -0.44
SCAF1-202ENST00000595242 MGRN1O60291 552 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 CCDC166P0CW27 439 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 CD1DP15813 335 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 CALB2P22676 271 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 HTR1EP28566 365 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 MC4RP32245 332 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 IDH3AP50213 366 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 EPHB1P54762 984 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 KRTAP10-9P60411 292 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 ELF3P78545 371 aaPredicted RBP12.33□□□□□ -0.44
SCAF1-202ENST00000595242 CACNG1Q06432 222 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 GPR18Q14330 331 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 VWA2Q5GFL6 755 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 EPGNQ6UW88 154 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 PARP9Q8IXQ6 854 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 ZNF295-AS1Q8N0V1 137 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 GALNT16Q8N428 558 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 ZNF781Q8N8C0 355 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 FAR1Q8WVX9 515 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 ITLN2Q8WWU7 325 aaPredicted RBP12.33□□□□□ -0.44
SCAF1-202ENST00000595242 L3HYPDHQ96EM0 354 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 NSL1Q96IY1 281 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 CNDP1Q96KN2 507 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 LRFN5Q96NI6 719 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 BIRC8Q96P09 236 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 SMIM14Q96QK8 99 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 EBF4Q9BQW3 602 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 CCDC106Q9BWC9 280 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 TFB2MQ9H5Q4 396 aaKnown RBP12.33□□□□□ -0.44
SCAF1-202ENST00000595242 ZBTB20Q9HC78 741 aaPredicted RBP12.33□□□□□ -0.44
SCAF1-202ENST00000595242 SYTL2Q9HCH5 934 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 ARL8BQ9NVJ2 186 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 VTI1BQ9UEU0 232 aa12.33□□□□□ -0.44
SCAF1-202ENST00000595242 MATN2O00339 956 aa12.32□□□□□ -0.44
SCAF1-202ENST00000595242 GAPDHSO14556 408 aaPredicted RBP12.32□□□□□ -0.44
SCAF1-202ENST00000595242 NUAK1O60285 661 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms