RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 BCL6P41182 706 aa14.32□□□□□ -0.12
UPF1-202ENST00000594243 HSPA7P48741 367 aa14.32□□□□□ -0.12
UPF1-202ENST00000594243 RPS18P62269 152 aaKnown RBP14.32□□□□□ -0.12
UPF1-202ENST00000594243 VSNL1P62760 191 aa14.32□□□□□ -0.12
UPF1-202ENST00000594243 MEF2AQ02078 507 aaPredicted RBP14.32□□□□□ -0.12
UPF1-202ENST00000594243 FAM53BQ14153 422 aa14.32□□□□□ -0.12
UPF1-202ENST00000594243 UGT8Q16880 541 aa14.32□□□□□ -0.12
UPF1-202ENST00000594243 MRPL14Q6P1L8 145 aaKnown RBP14.32□□□□□ -0.12
UPF1-202ENST00000594243 BORAQ6PGQ7 559 aa14.32□□□□□ -0.12
UPF1-202ENST00000594243 OVCH1Q7RTY7 1134 aa14.32□□□□□ -0.12
UPF1-202ENST00000594243 TMPRSS11BQ86T26 416 aa14.32□□□□□ -0.12
UPF1-202ENST00000594243 ASPGQ86U10 573 aa14.32□□□□□ -0.12
UPF1-202ENST00000594243 LSM14AQ8ND56 463 aaKnown RBP14.32□□□□□ -0.12
UPF1-202ENST00000594243 SLC13A3Q8WWT9 602 aa14.32□□□□□ -0.12
UPF1-202ENST00000594243 THAP4Q8WY91 577 aa14.32□□□□□ -0.12
UPF1-202ENST00000594243 COL26A1Q96A83 441 aa14.32□□□□□ -0.12
UPF1-202ENST00000594243 FKBP10Q96AY3 582 aa14.32□□□□□ -0.12
UPF1-202ENST00000594243 GPR78Q96P69 363 aa14.32□□□□□ -0.12
UPF1-202ENST00000594243 ARHGAP9Q9BRR9 750 aa14.32□□□□□ -0.12
UPF1-202ENST00000594243 SYNPO2LQ9H987 977 aa14.32□□□□□ -0.12
UPF1-202ENST00000594243 PSMC3IPQ9P2W1 217 aaPredicted RBP14.32□□□□□ -0.12
UPF1-202ENST00000594243 BAHCC1Q9P281 2608 aa14.32□□□□□ -0.12
UPF1-202ENST00000594243 CDC14CA4D256 554 aa14.31□□□□□ -0.12
UPF1-202ENST00000594243 UBXN8O00124 270 aa14.31□□□□□ -0.12
UPF1-202ENST00000594243 SLC35G6P0C7Q6 338 aa14.31□□□□□ -0.12
UPF1-202ENST00000594243 ATXN8OSP0DMR3 200 aa14.31□□□□□ -0.12
UPF1-202ENST00000594243 AHRP35869 848 aa14.31□□□□□ -0.12
UPF1-202ENST00000594243 OR1D4P47884 311 aa14.31□□□□□ -0.12
UPF1-202ENST00000594243 AVPR1BP47901 424 aa14.31□□□□□ -0.12
UPF1-202ENST00000594243 PWP1Q13610 501 aa14.31□□□□□ -0.12
UPF1-202ENST00000594243 SSPNQ14714 243 aa14.31□□□□□ -0.12
UPF1-202ENST00000594243 SLC9A5Q14940 896 aa14.31□□□□□ -0.12
UPF1-202ENST00000594243 TBR1Q16650 682 aa14.31□□□□□ -0.12
UPF1-202ENST00000594243 PDK4Q16654 411 aa14.31□□□□□ -0.12
UPF1-202ENST00000594243 ATG9BQ674R7 924 aa14.31□□□□□ -0.12
UPF1-202ENST00000594243 LRRC70Q7Z2Q7 622 aa14.31□□□□□ -0.12
UPF1-202ENST00000594243 VN1R4Q7Z5H5 301 aa14.31□□□□□ -0.12
UPF1-202ENST00000594243 PLD6Q8N2A8 252 aaKnown RBP14.31□□□□□ -0.12
UPF1-202ENST00000594243 SNX31Q8N9S9 440 aa14.31□□□□□ -0.12
UPF1-202ENST00000594243 TTC9Q92623 222 aa14.31□□□□□ -0.12
UPF1-202ENST00000594243 ESAMQ96AP7 390 aa14.31□□□□□ -0.12
UPF1-202ENST00000594243 C10orf90Q96M02 699 aa14.31□□□□□ -0.12
UPF1-202ENST00000594243 DRC3Q9H069 523 aa14.31□□□□□ -0.12
UPF1-202ENST00000594243 SLC26A1Q9H2B4 701 aa14.31□□□□□ -0.12
UPF1-202ENST00000594243 ZFP69BQ9UJL9 534 aa14.31□□□□□ -0.12
UPF1-202ENST00000594243 TMCO1Q9UM00 188 aa14.31□□□□□ -0.12
UPF1-202ENST00000594243 POLHQ9Y253 713 aa14.31□□□□□ -0.12
UPF1-202ENST00000594243 MAU2Q9Y6X3 613 aa14.31□□□□□ -0.12
UPF1-202ENST00000594243 SNRNP200O75643 2136 aaKnown RBP14.3□□□□□ -0.12
UPF1-202ENST00000594243 K7EPI3 171 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 P2RX6O15547 441 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 RFPL1O75677 317 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 KLF7O75840 302 aaPredicted RBP14.3□□□□□ -0.12
UPF1-202ENST00000594243 TUBBP07437 444 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 MTHFD2P13995 350 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 GFAPP14136 432 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 ITGAXP20702 1163 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 DEKP35659 375 aaKnown RBP14.3□□□□□ -0.12
UPF1-202ENST00000594243 FOLR3P41439 243 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 CCR10P46092 362 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 SCTRP47872 440 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 ALDH18A1P54886 795 aaKnown RBP14.3□□□□□ -0.12
UPF1-202ENST00000594243 REEP5Q00765 189 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 COL9A2Q14055 689 aaPredicted RBP14.3□□□□□ -0.12
UPF1-202ENST00000594243 RBBP5Q15291 538 aaKnown RBP14.3□□□□□ -0.12
UPF1-202ENST00000594243 PFKFB4Q16877 469 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 ERCC6LQ2NKX8 1250 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 DEFB109BQ30KR1 87 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 FBXO48Q5FWF7 155 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 TECRLQ5HYJ1 363 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 EMBQ6PCB8 327 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 SLCO4C1Q6ZQN7 724 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 LCA5Q86VQ0 697 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 KRT78Q8N1N4 520 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 ARHGEF39Q8N4T4 335 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 METTL27Q8N6F8 245 aaPredicted RBP14.3□□□□□ -0.12
UPF1-202ENST00000594243 TRPV3Q8NET8 790 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 OR2Y1Q8NGV0 311 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 ACMSDQ8TDX5 336 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 ZDHHC19Q8WVZ1 309 aaPredicted RBP14.3□□□□□ -0.12
UPF1-202ENST00000594243 APOBEC4Q8WW27 367 aaKnown RBP14.3□□□□□ -0.12
UPF1-202ENST00000594243 EXTL1Q92935 676 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 MMABQ96EY8 250 aaPredicted RBP14.3□□□□□ -0.12
UPF1-202ENST00000594243 SCYL1Q96KG9 808 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 PITHD1Q9GZP4 211 aaPredicted RBP14.3□□□□□ -0.12
UPF1-202ENST00000594243 EHD1Q9H4M9 534 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 NT5DC2Q9H857 520 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 WDR54Q9H977 334 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 SLC22A11Q9NSA0 550 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 OPTCQ9UBM4 332 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 ZNF282Q9UDV7 671 aaPredicted RBP14.3□□□□□ -0.12
UPF1-202ENST00000594243 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.3□□□□□ -0.12
UPF1-202ENST00000594243 TBK1Q9UHD2 729 aa14.3□□□□□ -0.12
UPF1-202ENST00000594243 NXT1Q9UKK6 140 aaKnown RBP14.3□□□□□ -0.12
UPF1-202ENST00000594243 PTRH2Q9Y3E5 179 aaKnown RBP14.3□□□□□ -0.12
UPF1-202ENST00000594243 TNPO3Q9Y5L0 923 aaKnown RBP14.3□□□□□ -0.12
UPF1-202ENST00000594243 V9GYY5 206 aaPredicted RBP14.3□□□□□ -0.12
UPF1-202ENST00000594243 SMG1Q96Q15 3661 aaKnown RBP14.29□□□□□ -0.12
UPF1-202ENST00000594243 URADA6NGE7 173 aa14.29□□□□□ -0.12
UPF1-202ENST00000594243 H0YIG0 161 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms