RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 TSNAXIP1Q2TAA8 658 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 HKDC1Q2TB90 917 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 C18orf21Q32NC0 220 aaPredicted RBP11.34□□□□□ -0.59
LIG3-213ENST00000590630 CATSPEREQ5SY80 951 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 MRPL14Q6P1L8 145 aaKnown RBP11.34□□□□□ -0.59
LIG3-213ENST00000590630 WDR93Q6P2C0 686 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 C16orf46Q6P387 395 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 NXPE4Q6UWF7 544 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 TIFABQ6ZNK6 161 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 LRRC70Q7Z2Q7 622 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 VN1R4Q7Z5H5 301 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 TMPRSS11BQ86T26 416 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 ARHGEF39Q8N4T4 335 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 MFSD9Q8NBP5 474 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 CAMKVQ8NCB2 501 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 LSM14AQ8ND56 463 aaKnown RBP11.34□□□□□ -0.59
LIG3-213ENST00000590630 UBTD2Q8WUN7 234 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 UBLCP1Q8WVY7 318 aaPredicted RBP11.34□□□□□ -0.59
LIG3-213ENST00000590630 EXT2Q93063 718 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 GPR78Q96P69 363 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 AIF1LQ9BQI0 150 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 DRC3Q9H069 523 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 SLC26A1Q9H2B4 701 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 WDR54Q9H977 334 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 DNAJC11Q9NVH1 559 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 CDC14AQ9UNH5 594 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 CFAP46Q8IYW2 2715 aa11.34□□□□□ -0.59
LIG3-213ENST00000590630 SPTA1P02549 2419 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 IQANK1A0A1B0GTG1 560 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 UBXN8O00124 270 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 ATXN7O15265 892 aaPredicted RBP11.33□□□□□ -0.6
LIG3-213ENST00000590630 P2RX6O15547 441 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 PRPF4O43172 522 aaKnown RBP eCLIP11.33□□□□□ -0.6
LIG3-213ENST00000590630 OR1F1O43749 312 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 LCMT2O60294 686 aaKnown RBP11.33□□□□□ -0.6
LIG3-213ENST00000590630 KLF7O75840 302 aaPredicted RBP11.33□□□□□ -0.6
LIG3-213ENST00000590630 MED26O95402 600 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 RBP1P09455 135 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 MTHFD2P13995 350 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 CXCR2P25025 360 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 AHRP35869 848 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 HSPA7P48741 367 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 NFKB2Q00653 900 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 REEP5Q00765 189 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 MEF2AQ02078 507 aaPredicted RBP11.33□□□□□ -0.6
LIG3-213ENST00000590630 SLC9A5Q14940 896 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 TBR1Q16650 682 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 PDK4Q16654 411 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 ATP1A1-AS1Q5TC04 95 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 MLIPQ5VWP3 458 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 BORAQ6PGQ7 559 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 SLCO4C1Q6ZQN7 724 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 OVCH1Q7RTY7 1134 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 ASPGQ86U10 573 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 LCA5Q86VQ0 697 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 OR2Y1Q8NGV0 311 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 SLC13A3Q8WWT9 602 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 THAP4Q8WY91 577 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 TM4SF19Q96DZ7 209 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 CD244Q9BZW8 370 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 PITHD1Q9GZP4 211 aaPredicted RBP11.33□□□□□ -0.6
LIG3-213ENST00000590630 EHD1Q9H4M9 534 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 ZNF304Q9HCX3 659 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 SLC22A11Q9NSA0 550 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 ZFP69BQ9UJL9 534 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 NXT1Q9UKK6 140 aaKnown RBP11.33□□□□□ -0.6
LIG3-213ENST00000590630 POLHQ9Y253 713 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 MED13Q9UHV7 2174 aa11.33□□□□□ -0.6
LIG3-213ENST00000590630 COL6A6A6NMZ7 2263 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 CDC14CA4D256 554 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 MAP2K7O14733 419 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 CLGNO14967 610 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 NDUFS4O43181 175 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 KLK8O60259 260 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 CCNT2O60583 730 aaKnown RBP11.32□□□□□ -0.6
LIG3-213ENST00000590630 H2AFYO75367 372 aaKnown RBP11.32□□□□□ -0.6
LIG3-213ENST00000590630 RFPL1O75677 317 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 FURINP09958 794 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 C1GALT1C1LP0DN25 315 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 GFAPP14136 432 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 GSTM2P28161 218 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 FOLR3P41439 243 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 CCR10P46092 362 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 SCTRP47872 440 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 OR1D4P47884 311 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 ALDH18A1P54886 795 aaKnown RBP11.32□□□□□ -0.6
LIG3-213ENST00000590630 PWP1Q13610 501 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 IL10RAQ13651 578 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 COL9A2Q14055 689 aaPredicted RBP11.32□□□□□ -0.6
LIG3-213ENST00000590630 DSG2Q14126 1118 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 SETDB1Q15047 1291 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 FBXO48Q5FWF7 155 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 TECRLQ5HYJ1 363 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 ATG9BQ674R7 924 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 TMEM214Q6NUQ4 689 aaKnown RBP11.32□□□□□ -0.6
LIG3-213ENST00000590630 METTL2BQ6P1Q9 378 aaKnown RBP11.32□□□□□ -0.6
LIG3-213ENST00000590630 EMBQ6PCB8 327 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 COX15Q7KZN9 410 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 KRT78Q8N1N4 520 aa11.32□□□□□ -0.6
LIG3-213ENST00000590630 PLD6Q8N2A8 252 aaKnown RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms