RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 CPEB2Q7Z5Q1 589 aaKnown RBP3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 PIGWQ7Z7B1 504 aa3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 CCDC60Q8IWA6 550 aaPredicted RBP3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 APCDD1Q8J025 514 aa3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 OR5T2Q8NGG2 359 aa3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 C9orf43Q8TAL5 461 aaPredicted RBP3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 HEXDCQ8WVB3 486 aa3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 RAD54LQ92698 747 aa3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 GDAP1L1Q96MZ0 367 aa3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 PI4K2AQ9BTU6 479 aa3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 CDK19Q9BWU1 502 aa3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 HOXD1Q9GZZ0 328 aa3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 PHPT1Q9NRX4 125 aaPredicted RBP3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 TBC1D13Q9NVG8 400 aa3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 TEX10Q9NXF1 929 aaPredicted RBP3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 NUDT4Q9NZJ9 180 aa3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 IL36AQ9UHA7 158 aa3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 ARID2Q68CP9 1835 aa3.86□□□□□ -1.79
SMCHD1-204ENST00000581226 FAM86B1E9PN63 330 aa3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 F8VVB4 439 aa3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 F8VWA3 439 aa3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 TBCAO75347 108 aaKnown RBP3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 PGLSO95336 258 aa3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 FAM86B2P0C5J1 330 aa3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 UGT1A4P22310 534 aa3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 AADACP22760 399 aa3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 PRKCIP41743 596 aa3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 GMPSP49915 693 aaPredicted RBP3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 NAGLUP54802 743 aa3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 GSCP56915 257 aaPredicted RBP3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 FASTKD3Q14CZ7 662 aaKnown RBP3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 TAF1BQ53T94 588 aaPredicted RBP3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 SHEQ5VZ18 495 aa3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 FAM166AQ6J272 317 aa3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 TTC27Q6P3X3 843 aa3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 FUT10Q6P4F1 479 aa3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 TRAT1Q6PIZ9 186 aa3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 KIF6Q6ZMV9 814 aa3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 MYPOPQ86VE0 399 aaPredicted RBP3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 CATSPERDQ86XM0 798 aa3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 CROCCP3Q8IVE0 287 aa3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 THNSL1Q8IYQ7 743 aa3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 TCEANCQ8N8B7 351 aa3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 OCC1Q8TAD7 63 aa3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 GTF3AQ92664 365 aaKnown RBP3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 RBM4BQ9BQ04 359 aaKnown RBP3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 B3GAT2Q9NPZ5 323 aa3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 HACD3Q9P035 362 aa3.85□□□□□ -1.79
SMCHD1-204ENST00000581226 MTMR11A4FU01 709 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 HTR3EA5X5Y0 456 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 MPTX1A8MV57 137 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 PPIP5K2O43314 1243 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 CYTIPO60759 359 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 HSPA4LO95757 839 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 RPN1P04843 607 aaKnown RBP3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 CENPBP07199 599 aaPredicted RBP3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 YES1P07947 543 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 VIMP08670 466 aaKnown RBP3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 KRT5P13647 590 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 ADRA2CP18825 462 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 DUTP33316 252 aaKnown RBP3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 GP5P40197 560 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 CDX1P47902 265 aaPredicted RBP3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 TMEM50BP56557 158 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 IL10RBQ08334 325 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 CALCOCO2Q13137 446 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 SRSF9Q13242 221 aaKnown RBP eCLIP3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 TRA2AQ13595 282 aaKnown RBP eCLIP3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 MOGAT2Q3SYC2 334 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 C2CD6Q53TS8 623 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 SPOUT1Q5T280 376 aaKnown RBP3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 LCE1FQ5T754 118 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 GTSCR1Q86UQ5 136 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 METTL23Q86XA0 190 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 VSIG1Q86XK7 387 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 TIGD4Q8IY51 512 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 NXPE2Q96DL1 559 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 RBM41Q96IZ5 413 aaKnown RBP3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 FAM218AQ96MZ4 157 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 ATOH8Q96SQ7 321 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 PKP2Q99959 881 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 INPP5KQ9BT40 448 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 EDEM3Q9BZQ6 932 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 UBXN6Q9BZV1 441 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 MTHFD2LQ9H903 347 aaPredicted RBP3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 PAK5Q9P286 719 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 SLC12A6Q9UHW9 1150 aa3.84□□□□□ -1.79
SMCHD1-204ENST00000581226 TMEM150CB9EJG8 249 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 SLC1A7O00341 560 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 IDH3BO43837 385 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 FCGR3BO75015 233 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 CEACAM4O75871 244 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 FAM58BPP0C7Q3 252 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 CD59P13987 128 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 IFNAR1P17181 557 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 LBPP18428 481 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 PSMB4P28070 264 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 SSTR1P30872 391 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 HOXC13P31276 330 aa3.83□□□□□ -1.8
SMCHD1-204ENST00000581226 OR1D5P58170 312 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms