RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 NPIPB8E9PQR5 432 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 SDHDO14521 159 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 DIAPH2O60879 1101 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 CLEC3AO75596 197 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 ZBTB11O95625 1053 aaPredicted RBP10.29□□□□□ -0.76
SS18-213ENST00000579640 ST6GAL1P15907 406 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 IDH3AP50213 366 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 CFHR1Q03591 330 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 IMPG1Q17R60 797 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 ZC3H12BQ5HYM0 836 aaKnown RBP10.29□□□□□ -0.76
SS18-213ENST00000579640 CACHD1Q5VU97 1274 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 USP53Q70EK8 1073 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 RNF44Q7L0R7 432 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 ZNF740Q8NDX6 193 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 TRPV3Q8NET8 790 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 OR4D9Q8NGE8 314 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 HUS1BQ8NHY5 278 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 ACTRT2Q8TDY3 377 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 C10orf82Q8WW14 230 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 PPM1MQ96MI6 270 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 GFM1Q96RP9 751 aaKnown RBP10.29□□□□□ -0.76
SS18-213ENST00000579640 ZFYVE21Q9BQ24 234 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 RABEP2Q9H5N1 569 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 PDP2Q9P2J9 529 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 ZFP69BQ9UJL9 534 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 PILRAQ9UKJ1 303 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 KLHL20Q9Y2M5 609 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 PCDHGA4Q9Y5G9 962 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 AP1M2Q9Y6Q5 423 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 ASCC3Q8N3C0 2202 aaKnown RBP10.29□□□□□ -0.76
SS18-213ENST00000579640 RP1P56715 2156 aa10.29□□□□□ -0.76
SS18-213ENST00000579640 FEZF1A0PJY2 475 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 SLC9B1P1A6NJY1 282 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 NTN3O00634 580 aaPredicted RBP10.28□□□□□ -0.76
SS18-213ENST00000579640 RASSF9O75901 435 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 RSL1D1O76021 490 aaKnown RBP10.28□□□□□ -0.76
SS18-213ENST00000579640 JUNP05412 331 aaKnown RBP10.28□□□□□ -0.76
SS18-213ENST00000579640 ANKRD34CP0C6C1 535 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 LINC00032P0C843 101 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 PVRP15151 417 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 PRPH2P23942 346 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 BCL6P41182 706 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 ACADVLP49748 655 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 NEK2P51955 445 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 E2F1Q01094 437 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 DDX39BQ13838 428 aaKnown RBP10.28□□□□□ -0.76
SS18-213ENST00000579640 SMU1Q2TAY7 513 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 SLC9B1Q4ZJI4 515 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 SGO1Q5FBB7 561 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 VWA5B1Q5TIE3 1220 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 FBXO42Q6P3S6 717 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 ASCL5Q7RTU5 278 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 PIP4P1Q86T03 277 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.28□□□□□ -0.76
SS18-213ENST00000579640 ANKRD53Q8N9V6 530 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 CEP70Q8NHQ1 597 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 MTFMTQ96DP5 389 aaKnown RBP10.28□□□□□ -0.76
SS18-213ENST00000579640 PRR11Q96HE9 360 aaPredicted RBP10.28□□□□□ -0.76
SS18-213ENST00000579640 METTL2AQ96IZ6 378 aaKnown RBP10.28□□□□□ -0.76
SS18-213ENST00000579640 PPP3R2Q96LZ3 170 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 SERPINI1Q99574 410 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 NUDT22Q9BRQ3 303 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 PRM3Q9NNZ6 103 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 PDE7BQ9NP56 450 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 TCF7L2Q9NQB0 619 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 DMRT3Q9NQL9 472 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 FARSBQ9NSD9 589 aaKnown RBP10.28□□□□□ -0.76
SS18-213ENST00000579640 ARL2BPQ9Y2Y0 163 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 WDFY4Q6ZS81 3184 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 MAGEB17A8MXT2 336 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 KIF1CO43896 1103 aaKnown RBP10.28□□□□□ -0.76
SS18-213ENST00000579640 LCMT2O60294 686 aaKnown RBP10.28□□□□□ -0.76
SS18-213ENST00000579640 GDF9O60383 454 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 PTX3P26022 381 aaPredicted RBP10.28□□□□□ -0.76
SS18-213ENST00000579640 EPHA3P29320 983 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 ARL4DP49703 201 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 GABPB1Q06547 395 aaPredicted RBP10.28□□□□□ -0.76
SS18-213ENST00000579640 SPIDRQ14159 915 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 ZIC1Q15915 447 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 SCIMPQ6UWF3 145 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 Q6ZSR9 355 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 PLD3Q8IV08 490 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 ZNF655Q8N720 491 aaPredicted RBP10.28□□□□□ -0.76
SS18-213ENST00000579640 ANKS4BQ8N8V4 417 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 CCDC197Q8NCU1 140 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 KLHL6Q8WZ60 621 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 RERGQ96A58 199 aaPredicted RBP10.28□□□□□ -0.76
SS18-213ENST00000579640 TUBGCP3Q96CW5 907 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 CMTM7Q96FZ5 175 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 SLC41A2Q96JW4 573 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 C3orf30Q96M34 536 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 RILPQ96NA2 401 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 OR2A5Q96R48 311 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 MTERF1Q99551 399 aaKnown RBP10.28□□□□□ -0.76
SS18-213ENST00000579640 EBF4Q9BQW3 602 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 CENPKQ9BS16 269 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 ACPTQ9BZG2 426 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 KLHL25Q9H0H3 589 aa10.28□□□□□ -0.76
SS18-213ENST00000579640 ZNF768Q9H5H4 540 aaKnown RBP10.28□□□□□ -0.76
SS18-213ENST00000579640 SYNDIG1Q9H7V2 258 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms