RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 CCND2P30279 289 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 CBSP35520 551 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 FOLR3P41439 243 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 C21orf58P58505 322 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 SNRPEP62304 92 aaKnown RBP5.53□□□□□ -1.52
VPS53-219ENST00000576019 CDK3Q00526 305 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 CETN1Q12798 172 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 MELKQ14680 651 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 NONOQ15233 471 aaKnown RBP eCLIP5.53□□□□□ -1.52
VPS53-219ENST00000576019 ZKSCAN8Q15776 578 aaPredicted RBP5.53□□□□□ -1.52
VPS53-219ENST00000576019 EIF2S3LQ2VIR3 472 aaKnown RBP5.53□□□□□ -1.52
VPS53-219ENST00000576019 ZNF385BQ569K4 471 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 AARS2Q5JTZ9 985 aaKnown RBP5.53□□□□□ -1.52
VPS53-219ENST00000576019 PLEKHA7Q6IQ23 1121 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 ARHGAP11AQ6P4F7 1023 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 NOTUMQ6P988 496 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 IRF2BP2Q7Z5L9 587 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 PEG10Q86TG7 708 aaKnown RBP5.53□□□□□ -1.52
VPS53-219ENST00000576019 SYVN1Q86TM6 617 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 EXOC3L1Q86VI1 746 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 AMZ2Q86W34 360 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 WIPF2Q8TF74 440 aaPredicted RBP5.53□□□□□ -1.52
VPS53-219ENST00000576019 UBLCP1Q8WVY7 318 aaPredicted RBP5.53□□□□□ -1.52
VPS53-219ENST00000576019 ATL1Q8WXF7 558 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 CASP10Q92851 521 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 SLAMF9Q96A28 289 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 P2RY11Q96G91 374 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 FNDC11Q9BVV2 318 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 KRTAP4-8Q9BYQ9 185 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 RAB17Q9H0T7 212 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 WNT5BQ9H1J7 359 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 RPF1Q9H9Y2 349 aaKnown RBP5.53□□□□□ -1.52
VPS53-219ENST00000576019 CPNE5Q9HCH3 593 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 MKKSQ9NPJ1 570 aaPredicted RBP5.53□□□□□ -1.52
VPS53-219ENST00000576019 ATAD3AQ9NVI7 634 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 ANKRD10Q9NXR5 420 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 SLCO1C1Q9NYB5 712 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 DKK2Q9UBU2 259 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 MAD2L2Q9UI95 211 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 EXOC6BQ9Y2D4 811 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 PADI2Q9Y2J8 665 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 STON1Q9Y6Q2 735 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 ASCC3Q8N3C0 2202 aaKnown RBP5.53□□□□□ -1.52
VPS53-219ENST00000576019 STAB1Q9NY15 2570 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 CSMD2Q7Z408 3487 aa5.53□□□□□ -1.52
VPS53-219ENST00000576019 SPAG17Q6Q759 2223 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 CABIN1Q9Y6J0 2220 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 TCRBV5S1A1TA0A578 114 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 SLC22A23A1A5C7 686 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 DUXAA6NLW8 204 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 CCDC169A6NNP5 214 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 TMEM110-MUSTN1A8MSY1 372 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 O00370 1275 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 NDUFS4O43181 175 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 XRCC3O43542 346 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 SSX4O60224 188 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 ZNF217O75362 1048 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 SCGB2A1O75556 95 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 OR6B1O95007 311 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 CLDN7O95471 211 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 PLGP00747 810 aaPredicted RBP5.52□□□□□ -1.53
VPS53-219ENST00000576019 EGFP01133 1207 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 TOP1P11387 765 aaKnown RBP5.52□□□□□ -1.53
VPS53-219ENST00000576019 G6PDP11413 515 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 SKILP12757 684 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 UGT1A6P19224 532 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 IL4RP24394 825 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 ACP1P24666 158 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 MPZP25189 248 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 SLC6A6P31641 620 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 MPLP40238 635 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 EIF2S3P41091 472 aaKnown RBP5.52□□□□□ -1.53
VPS53-219ENST00000576019 RAP1GAPP47736 663 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 CCT8P50990 548 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 RUNX1T1Q06455 604 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 CHIT1Q13231 466 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 RIPK1Q13546 671 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 LPIN1Q14693 890 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 ALG10Q5BKT4 473 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 ALG10BQ5I7T1 473 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 DDX59Q5T1V6 619 aaKnown RBP eCLIP5.52□□□□□ -1.53
VPS53-219ENST00000576019 TMEM63BQ5T3F8 832 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 KCTD11Q693B1 232 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 CENPPQ6IPU0 288 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 RNF207Q6ZRF8 634 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 PM20D2Q8IYS1 436 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 SPATA6LQ8N4H0 392 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 HORMAD2Q8N7B1 307 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 SCCPDHQ8NBX0 429 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 TMEM185AQ8NFB2 350 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 FAM46BQ96A09 425 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 DAZAP1Q96EP5 407 aaKnown RBP5.52□□□□□ -1.53
VPS53-219ENST00000576019 SGF29Q96ES7 293 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 EPSTI1Q96J88 318 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 SFXN2Q96NB2 322 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 ZNF559Q9BR84 538 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 TMEM79Q9BSE2 394 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 KRTAP17-1Q9BYP8 105 aa5.52□□□□□ -1.53
VPS53-219ENST00000576019 DDX47Q9H0S4 455 aaKnown RBP5.52□□□□□ -1.53
VPS53-219ENST00000576019 RIBC2Q9H4K1 309 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms