RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 TEX19Q8NA77 164 aa7.11□□□□□ -1.27
NUP88-205ENST00000572809 FBXO15Q8NCQ5 510 aaPredicted RBP7.11□□□□□ -1.27
NUP88-205ENST00000572809 C2CD4AQ8NCU7 369 aaPredicted RBP7.11□□□□□ -1.27
NUP88-205ENST00000572809 GIMAP7Q8NHV1 300 aa7.11□□□□□ -1.27
NUP88-205ENST00000572809 ZNF480Q8WV37 535 aa7.11□□□□□ -1.27
NUP88-205ENST00000572809 SMPDL3AQ92484 453 aa7.11□□□□□ -1.27
NUP88-205ENST00000572809 CERS2Q96G23 380 aa7.11□□□□□ -1.27
NUP88-205ENST00000572809 PWWP2AQ96N64 755 aa7.11□□□□□ -1.27
NUP88-205ENST00000572809 ZNF285Q96NJ3 590 aa7.11□□□□□ -1.27
NUP88-205ENST00000572809 IP6K3Q96PC2 410 aa7.11□□□□□ -1.27
NUP88-205ENST00000572809 SELENOSQ9BQE4 189 aa7.11□□□□□ -1.27
NUP88-205ENST00000572809 AARSD1Q9BTE6 412 aaKnown RBP7.11□□□□□ -1.27
NUP88-205ENST00000572809 DPH7Q9BTV6 452 aa7.11□□□□□ -1.27
NUP88-205ENST00000572809 SLC25A23Q9BV35 468 aa7.11□□□□□ -1.27
NUP88-205ENST00000572809 ACAT2Q9BWD1 397 aa7.11□□□□□ -1.27
NUP88-205ENST00000572809 TRIM4Q9C037 500 aa7.11□□□□□ -1.27
NUP88-205ENST00000572809 MRPS30Q9NP92 439 aaKnown RBP7.11□□□□□ -1.27
NUP88-205ENST00000572809 PPANQ9NQ55 473 aaKnown RBP7.11□□□□□ -1.27
NUP88-205ENST00000572809 CUTCQ9NTM9 273 aa7.11□□□□□ -1.27
NUP88-205ENST00000572809 ZC3H7BQ9UGR2 993 aaKnown RBP7.11□□□□□ -1.27
NUP88-205ENST00000572809 PTRH2Q9Y3E5 179 aaKnown RBP7.11□□□□□ -1.27
NUP88-205ENST00000572809 KLK4Q9Y5K2 254 aa7.11□□□□□ -1.27
NUP88-205ENST00000572809 LOC105369274A0A096LPK9 316 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 LOC102723532A0A0G2JNH3 316 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 A0A1B0GX78 115 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 HYKKA2RU49 373 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 OR2A25A4D2G3 310 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 FITM1A5D6W6 292 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 E7ENX8 843 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 EIF3FO00303 357 aaPredicted RBP7.1□□□□□ -1.27
NUP88-205ENST00000572809 PEX12O00623 359 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 DSCR3O14972 297 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 TTI1O43156 1089 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 SLC16A8O95907 504 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 ONECUT2O95948 504 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 EIF2S1P05198 315 aaKnown RBP7.1□□□□□ -1.27
NUP88-205ENST00000572809 MCM3P25205 808 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 GABRB3P28472 473 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 OTX2P32243 289 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 CASRP41180 1078 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 RGS4P49798 205 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 CSRP3P50461 194 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 ITGA8P53708 1063 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 RRADP55042 308 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 ARL4CP56559 192 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 TIAL1Q01085 375 aaKnown RBP eCLIP7.1□□□□□ -1.27
NUP88-205ENST00000572809 TAP2Q03519 686 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 TLE1Q04724 770 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 CHAF1BQ13112 559 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 SLC9A5Q14940 896 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 TEDDM1Q5T9Z0 273 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 ICE2Q659A1 982 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 CPZQ66K79 652 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 LRRC8EQ6NSJ5 796 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 PAQR3Q6TCH7 311 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 KIAA0408Q6ZU52 694 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 UBE2R2Q712K3 238 aaPredicted RBP7.1□□□□□ -1.27
NUP88-205ENST00000572809 PALM2Q8IXS6 379 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 CPNE9Q8IYJ1 553 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 OR4N4Q8N0Y3 316 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 PPFIBP2Q8ND30 876 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 OR2Y1Q8NGV0 311 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 CD200R1Q8TD46 325 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 MCOLN3Q8TDD5 553 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 EEF1AKMT1Q8WVE0 214 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 LRRC39Q96DD0 335 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 CFAP36Q96G28 342 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 SNF8Q96H20 258 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 FER1L6-AS2Q96M78 137 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 KRT12Q99456 494 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 NDNQ99608 321 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 TM9SF2Q99805 663 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 ZFYVE21Q9BQ24 234 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 TRIM51Q9BSJ1 452 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 TRIM31Q9BZY9 425 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 MLXIPLQ9NP71 852 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 SLC22A11Q9NSA0 550 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 ABCF3Q9NUQ8 709 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 UTP6Q9NYH9 597 aaKnown RBP7.1□□□□□ -1.27
NUP88-205ENST00000572809 TAS2R13Q9NYV9 303 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 ANKMY1Q9P2S6 941 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 TAC3Q9UHF0 121 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 TRMT6Q9UJA5 497 aaKnown RBP7.1□□□□□ -1.27
NUP88-205ENST00000572809 G3BP2Q9UN86 482 aaKnown RBP7.1□□□□□ -1.27
NUP88-205ENST00000572809 PCDHGA9Q9Y5G4 932 aaKnown RBP7.1□□□□□ -1.27
NUP88-205ENST00000572809 TEX264Q9Y6I9 313 aa7.1□□□□□ -1.27
NUP88-205ENST00000572809 SEC16AO15027 2179 aa7.09□□□□□ -1.27
NUP88-205ENST00000572809 HELZ2Q9BYK8 2649 aaKnown RBP7.09□□□□□ -1.27
NUP88-205ENST00000572809 A6NL46 340 aa7.09□□□□□ -1.27
NUP88-205ENST00000572809 EFCAB8A8MWE9 144 aa7.09□□□□□ -1.27
NUP88-205ENST00000572809 H0YGG7 62 aa7.09□□□□□ -1.27
NUP88-205ENST00000572809 NDC80O14777 642 aa7.09□□□□□ -1.27
NUP88-205ENST00000572809 NRP2O60462 931 aa7.09□□□□□ -1.27
NUP88-205ENST00000572809 CNOT3O75175 753 aaKnown RBP7.09□□□□□ -1.27
NUP88-205ENST00000572809 DEAF1O75398 565 aaPredicted RBP7.09□□□□□ -1.27
NUP88-205ENST00000572809 CEACAM4O75871 244 aa7.09□□□□□ -1.27
NUP88-205ENST00000572809 SEC31AO94979 1220 aaKnown RBP7.09□□□□□ -1.27
NUP88-205ENST00000572809 HTR3BO95264 441 aa7.09□□□□□ -1.27
NUP88-205ENST00000572809 CCNDBP1O95273 360 aa7.09□□□□□ -1.27
NUP88-205ENST00000572809 IGHEP01854 428 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms