RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 HTR6P50406 440 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 DIO3P55073 304 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 CLDN2P57739 230 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 ACTR1AP61163 376 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 TSTA3Q13630 321 aaPredicted RBP7.67□□□□□ -1.18
VPS39-213ENST00000570062 SLBPQ14493 270 aaKnown RBP eCLIP7.67□□□□□ -1.18
VPS39-213ENST00000570062 CLCA4Q14CN2 919 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 TEAD4Q15561 434 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 CCDC6Q16204 474 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 MAPKAPK3Q16644 382 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 ZXDCQ2QGD7 858 aaPredicted RBP7.67□□□□□ -1.18
VPS39-213ENST00000570062 ALG11Q2TAA5 492 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 CCSMST1Q4G0I0 132 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 SGO1Q5FBB7 561 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 MANEAQ5SRI9 462 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 ICE2Q659A1 982 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 NOXRED1Q6NXP6 359 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 IYDQ6PHW0 289 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 XKR5Q6UX68 686 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 AMIGO1Q86WK6 493 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 GKN2Q86XP6 184 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 FAM129CQ86XR2 697 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 HID1Q8IV36 788 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 FUNDC1Q8IVP5 155 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 PHACTR4Q8IZ21 702 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 LIX1Q8N485 282 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 DCBLD1Q8N8Z6 715 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 FLCNQ8NFG4 579 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 HUS1BQ8NHY5 278 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 PROKR1Q8TCW9 393 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 LCN9Q8WX39 176 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 OR1E3Q8WZA6 343 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 ZUFSPQ96AP4 578 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 LRRC58Q96CX6 371 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 ASB9Q96DX5 294 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 ERLEC1Q96DZ1 483 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 ITCHQ96J02 903 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 CDRT15Q96T59 188 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 LRFN3Q9BTN0 628 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 EFHD1Q9BUP0 239 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.67□□□□□ -1.18
VPS39-213ENST00000570062 ACPTQ9BZG2 426 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 ROGDIQ9GZN7 287 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 DUSP15Q9H1R2 295 aaPredicted RBP7.67□□□□□ -1.18
VPS39-213ENST00000570062 VCX3BQ9H321 246 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 C6orf106Q9H6K1 298 aaPredicted RBP7.67□□□□□ -1.18
VPS39-213ENST00000570062 UCK1Q9HA47 277 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 FZD3Q9NPG1 666 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 AASDHPPTQ9NRN7 309 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 GEMIN8Q9NWZ8 242 aaKnown RBP7.67□□□□□ -1.18
VPS39-213ENST00000570062 ADA2Q9NZK5 511 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 STOML1Q9UBI4 398 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 SPASTQ9UBP0 616 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 SUCOQ9UBS9 1254 aaKnown RBP7.67□□□□□ -1.18
VPS39-213ENST00000570062 BAIAP2L1Q9UHR4 511 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 ANGPTL2Q9UKU9 493 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 PSMD13Q9UNM6 376 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 L3MBTL1Q9Y468 752 aa7.67□□□□□ -1.18
VPS39-213ENST00000570062 TICRRQ7Z2Z1 1910 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 ARHGAP10A1A4S6 786 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 MEI4A8MW99 385 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 TLR4O00206 839 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 FUCA1P04066 466 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 PGRP06401 933 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 GNSP15586 552 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 HPCAL1P37235 193 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 TRPC1P48995 793 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 EEFSECP57772 596 aaKnown RBP7.66□□□□□ -1.18
VPS39-213ENST00000570062 UFM1P61960 85 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 HNRNPKP61978 463 aaKnown RBP eCLIP7.66□□□□□ -1.18
VPS39-213ENST00000570062 TRA2BP62995 288 aaKnown RBP7.66□□□□□ -1.18
VPS39-213ENST00000570062 FOXK2Q01167 660 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 HMGCS1Q01581 520 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 PWP1Q13610 501 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 NFYCQ13952 458 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 TRIM25Q14258 630 aaKnown RBP7.66□□□□□ -1.18
VPS39-213ENST00000570062 RBBP5Q15291 538 aaKnown RBP7.66□□□□□ -1.18
VPS39-213ENST00000570062 SF1Q15637 639 aaKnown RBP7.66□□□□□ -1.18
VPS39-213ENST00000570062 VPS26BQ4G0F5 336 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 PIGGQ5H8A4 983 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 DEPDC1Q5TB30 811 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 IRAK1BP1Q5VVH5 260 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 NIPAL1Q6NVV3 410 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 C8orf82Q6P1X6 216 aaPredicted RBP7.66□□□□□ -1.18
VPS39-213ENST00000570062 SCIMPQ6UWF3 145 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 GK5Q6ZS86 529 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 PRICKLE2Q7Z3G6 844 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 RD3Q7Z3Z2 195 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 CAMKMTQ7Z624 323 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 GPR180Q86V85 440 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 PROSER1Q86XN7 944 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 TMEM126BQ8IUX1 230 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 SYT12Q8IV01 421 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 METTL4Q8N3J2 472 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 ENDOVQ8N8Q3 282 aaKnown RBP7.66□□□□□ -1.18
VPS39-213ENST00000570062 OR13H1Q8NG92 308 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 OR8J3Q8NGG0 315 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 OR52E1Q8NGJ3 308 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 CHTF18Q8WVB6 975 aa7.66□□□□□ -1.18
VPS39-213ENST00000570062 SLC13A3Q8WWT9 602 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms