RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 PRPS1L1P21108 318 aa14.01□□□□□ -0.17
VPS35-210ENST00000568784 ACRV1P26436 265 aa14.01□□□□□ -0.17
VPS35-210ENST00000568784 CD6P30203 668 aa14.01□□□□□ -0.17
VPS35-210ENST00000568784 NRIP1P48552 1158 aa14.01□□□□□ -0.17
VPS35-210ENST00000568784 CRISP3P54108 245 aa14.01□□□□□ -0.17
VPS35-210ENST00000568784 CYP4F8P98187 520 aa14.01□□□□□ -0.17
VPS35-210ENST00000568784 PROX2Q3B8N5 592 aa14.01□□□□□ -0.17
VPS35-210ENST00000568784 LRRC66Q68CR7 880 aa14.01□□□□□ -0.17
VPS35-210ENST00000568784 METTL4Q8N3J2 472 aa14.01□□□□□ -0.17
VPS35-210ENST00000568784 C11orf65Q8NCR3 313 aa14.01□□□□□ -0.17
VPS35-210ENST00000568784 GPR26Q8NDV2 337 aa14.01□□□□□ -0.17
VPS35-210ENST00000568784 IPCEF1Q8WWN9 437 aaPredicted RBP14.01□□□□□ -0.17
VPS35-210ENST00000568784 YIPF6Q96EC8 236 aa14.01□□□□□ -0.17
VPS35-210ENST00000568784 CTPS2Q9NRF8 586 aa14.01□□□□□ -0.17
VPS35-210ENST00000568784 VPS29Q9UBQ0 182 aa14.01□□□□□ -0.17
VPS35-210ENST00000568784 KLHL20Q9Y2M5 609 aa14.01□□□□□ -0.17
VPS35-210ENST00000568784 WDR90Q96KV7 1748 aa14.01□□□□□ -0.17
VPS35-210ENST00000568784 SYN3O14994 580 aa14□□□□□ -0.17
VPS35-210ENST00000568784 DNAJB5O75953 348 aa14□□□□□ -0.17
VPS35-210ENST00000568784 FAM214AQ32MH5 1076 aa14□□□□□ -0.17
VPS35-210ENST00000568784 C1QTNF12Q5T7M4 302 aa14□□□□□ -0.17
VPS35-210ENST00000568784 DEPDC1Q5TB30 811 aa14□□□□□ -0.17
VPS35-210ENST00000568784 KDM4DQ6B0I6 523 aa14□□□□□ -0.17
VPS35-210ENST00000568784 ZNF551Q7Z340 670 aaPredicted RBP14□□□□□ -0.17
VPS35-210ENST00000568784 TMPRSS11BQ86T26 416 aa14□□□□□ -0.17
VPS35-210ENST00000568784 CAMKK1Q8N5S9 505 aa14□□□□□ -0.17
VPS35-210ENST00000568784 MYLIPQ8WY64 445 aa14□□□□□ -0.17
VPS35-210ENST00000568784 UPF1Q92900 1129 aaKnown RBP eCLIP14□□□□□ -0.17
VPS35-210ENST00000568784 OTULINQ96BN8 352 aa14□□□□□ -0.17
VPS35-210ENST00000568784 SERHLQ9NQF3 203 aa14□□□□□ -0.17
VPS35-210ENST00000568784 TOR4AQ9NXH8 423 aa14□□□□□ -0.17
VPS35-210ENST00000568784 KIAA1522Q9P206 1035 aaPredicted RBP14□□□□□ -0.17
VPS35-210ENST00000568784 SAGE2PA6NJ88 616 aa14□□□□□ -0.17
VPS35-210ENST00000568784 C5orf58C9J3I9 102 aa14□□□□□ -0.17
VPS35-210ENST00000568784 GFRA2O00451 464 aa14□□□□□ -0.17
VPS35-210ENST00000568784 SNX4O95219 450 aa14□□□□□ -0.17
VPS35-210ENST00000568784 KCNK5O95279 499 aa14□□□□□ -0.17
VPS35-210ENST00000568784 SLC10A3P09131 477 aa14□□□□□ -0.17
VPS35-210ENST00000568784 CCR7P32248 378 aa14□□□□□ -0.17
VPS35-210ENST00000568784 NSG1P42857 185 aa14□□□□□ -0.17
VPS35-210ENST00000568784 MAGEA11P43364 429 aa14□□□□□ -0.17
VPS35-210ENST00000568784 EXOC3L2Q2M3D2 409 aa14□□□□□ -0.17
VPS35-210ENST00000568784 TRIB2Q92519 343 aa14□□□□□ -0.17
VPS35-210ENST00000568784 TTYH2Q9BSA4 534 aa14□□□□□ -0.17
VPS35-210ENST00000568784 HECAQ9UBI9 543 aaPredicted RBP14□□□□□ -0.17
VPS35-210ENST00000568784 MALT1Q9UDY8 824 aa14□□□□□ -0.17
VPS35-210ENST00000568784 SYNDIG1LA6NDD5 238 aa14□□□□□ -0.17
VPS35-210ENST00000568784 ZNF840PA6NDX5 716 aa14□□□□□ -0.17
VPS35-210ENST00000568784 PCDH7O60245 1069 aa14□□□□□ -0.17
VPS35-210ENST00000568784 IGSF6O95976 241 aa14□□□□□ -0.17
VPS35-210ENST00000568784 GJA1P17302 382 aa14□□□□□ -0.17
VPS35-210ENST00000568784 EPORP19235 508 aa14□□□□□ -0.17
VPS35-210ENST00000568784 CCND3P30281 292 aaPredicted RBP14□□□□□ -0.17
VPS35-210ENST00000568784 SLC19A1P41440 591 aa14□□□□□ -0.17
VPS35-210ENST00000568784 SLC15A1P46059 708 aa14□□□□□ -0.17
VPS35-210ENST00000568784 PPIGQ13427 754 aaKnown RBP eCLIP14□□□□□ -0.174e-7■□□□□ 10.9
VPS35-210ENST00000568784 ZFP69Q49AA0 526 aa14□□□□□ -0.17
VPS35-210ENST00000568784 ARTNQ5T4W7 220 aa14□□□□□ -0.17
VPS35-210ENST00000568784 NEK5Q6P3R8 708 aa14□□□□□ -0.17
VPS35-210ENST00000568784 VRK3Q8IV63 474 aa14□□□□□ -0.17
VPS35-210ENST00000568784 NFKBIDQ8NI38 313 aa14□□□□□ -0.17
VPS35-210ENST00000568784 CSGALNACT1Q8TDX6 532 aa14□□□□□ -0.17
VPS35-210ENST00000568784 SLC35B4Q969S0 331 aa14□□□□□ -0.17
VPS35-210ENST00000568784 SPATA7Q9P0W8 599 aa14□□□□□ -0.17
VPS35-210ENST00000568784 TSC2P49815 1807 aa14□□□□□ -0.17
VPS35-210ENST00000568784 OR2A25A4D2G3 310 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 FAM227AF5H4B4 570 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 ZNF197O14709 1029 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 PRKAR2AP13861 404 aaKnown RBP13.99□□□□□ -0.17
VPS35-210ENST00000568784 PREPP48147 710 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 CDC42P60953 191 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 MEF2AQ02078 507 aaPredicted RBP13.99□□□□□ -0.17
VPS35-210ENST00000568784 KEAP1Q14145 624 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 C11orf96Q7Z7L8 435 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 HMGN2P46Q86SG4 172 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 TRIM48Q8IWZ4 208 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 AUTS2Q8WXX7 1259 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 GGHQ92820 318 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 TRNT1Q96Q11 434 aaKnown RBP13.99□□□□□ -0.17
VPS35-210ENST00000568784 CCM2Q9BSQ5 444 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 GIMAP4Q9NUV9 329 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 DNAJC27Q9NZQ0 273 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 CCL27Q9Y4X3 112 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 CENPXA8MT69 81 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 WBP4O75554 376 aaKnown RBP13.99□□□□□ -0.17
VPS35-210ENST00000568784 DGKKQ5KSL6 1271 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 C10orf62Q5T681 223 aaPredicted RBP13.99□□□□□ -0.17
VPS35-210ENST00000568784 ERICH5Q6P6B1 374 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 ZZZ3Q8IYH5 903 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 OR5M11Q96RB7 305 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 PCDHGB6Q9Y5F9 930 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 NPIPB15A6NHN6 443 aaPredicted RBP13.99□□□□□ -0.17
VPS35-210ENST00000568784 H7C4K7 107 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 HOXA9P31269 272 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 RECQLP46063 649 aaPredicted RBP13.99□□□□□ -0.17
VPS35-210ENST00000568784 CBX2Q14781 532 aaPredicted RBP13.99□□□□□ -0.17
VPS35-210ENST00000568784 CMTM7Q96FZ5 175 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 SLC22A12Q96S37 553 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 P2RY13Q9BPV8 354 aa13.99□□□□□ -0.17
VPS35-210ENST00000568784 UNCXA6NJT0 531 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms