RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 TMCO1Q9UM00 188 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 MAN2B2Q9Y2E5 1009 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 COL6A6A6NMZ7 2263 aa12.39□□□□□ -0.43
CLK3-224ENST00000568605 TNRC6AQ8NDV7 1962 aaKnown RBP12.38□□□□□ -0.43
CLK3-224ENST00000568605 ATXN7O15265 892 aaPredicted RBP12.38□□□□□ -0.43
CLK3-224ENST00000568605 NKX2-8O15522 239 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 OR1F1O43749 312 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 H2AFYO75367 372 aaKnown RBP12.38□□□□□ -0.43
CLK3-224ENST00000568605 RBP1P09455 135 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 GFAPP14136 432 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 ITGAXP20702 1163 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 GSTM2P28161 218 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 HPDP32754 393 aaPredicted RBP12.38□□□□□ -0.43
CLK3-224ENST00000568605 AHRP35869 848 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 AVPR1BP47901 424 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 GLRBP48167 497 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 PIK3CGP48736 1102 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 HSPA7P48741 367 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 RPS18P62269 152 aaKnown RBP12.38□□□□□ -0.43
CLK3-224ENST00000568605 CYP4F2P78329 520 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 REEP5Q00765 189 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 IRF9Q00978 393 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 OCA2Q04671 838 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 DLG1Q12959 904 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 FAM53BQ14153 422 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 SLC9A5Q14940 896 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 PDK4Q16654 411 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 ZXDCQ2QGD7 858 aaPredicted RBP12.38□□□□□ -0.43
CLK3-224ENST00000568605 HKDC1Q2TB90 917 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 NIPAL1Q6NVV3 410 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 ADGRD1Q6QNK2 874 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 NXPE4Q6UWF7 544 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 LCA5Q86VQ0 697 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 KRT78Q8N1N4 520 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 METTL27Q8N6F8 245 aaPredicted RBP12.38□□□□□ -0.43
CLK3-224ENST00000568605 SNX31Q8N9S9 440 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 TTLQ8NG68 377 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 OR4K1Q8NGD4 311 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 COL26A1Q96A83 441 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 VPS50Q96JG6 964 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 C10orf90Q96M02 699 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 TMEM79Q9BSE2 394 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 PITHD1Q9GZP4 211 aaPredicted RBP12.38□□□□□ -0.43
CLK3-224ENST00000568605 EHD1Q9H4M9 534 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 AKIRIN1Q9H9L7 192 aaPredicted RBP12.38□□□□□ -0.43
CLK3-224ENST00000568605 ZNF304Q9HCX3 659 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 OPTCQ9UBM4 332 aa12.38□□□□□ -0.43
CLK3-224ENST00000568605 PTRH2Q9Y3E5 179 aaKnown RBP12.38□□□□□ -0.43
CLK3-224ENST00000568605 LOC400499M0QZD8 3231 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 FEZF1A0PJY2 475 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 URADA6NGE7 173 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 UBXN8O00124 270 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 TK2O00142 265 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 P2RX6O15547 441 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 NDUFS4O43181 175 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 CCNT2O60583 730 aaKnown RBP12.37□□□□□ -0.43
CLK3-224ENST00000568605 ONECUT2O95948 504 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 CAPN1P07384 714 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 ATXN8OSP0DMR3 200 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 SFTPCP11686 197 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 BCL6P41182 706 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 MEF2AQ02078 507 aaPredicted RBP12.37□□□□□ -0.43
CLK3-224ENST00000568605 PWP1Q13610 501 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 IL10RAQ13651 578 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 DSG2Q14126 1118 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 DEFB109BQ30KR1 87 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 TECRLQ5HYJ1 363 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 PAGE2BQ5JRK9 111 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 CATSPEREQ5SY80 951 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 ATG9BQ674R7 924 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 LCN10Q6JVE6 187 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 MRPL14Q6P1L8 145 aaKnown RBP12.37□□□□□ -0.43
CLK3-224ENST00000568605 EMBQ6PCB8 327 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 OVCH1Q7RTY7 1134 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 VN1R4Q7Z5H5 301 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 TRPV3Q8NET8 790 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 OR2Y1Q8NGV0 311 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 SLC13A3Q8WWT9 602 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 TTC9Q92623 222 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 EXTL1Q92935 676 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 SEC16BQ96JE7 1060 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 SCYL1Q96KG9 808 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 RUFY1Q96T51 708 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 CD244Q9BZW8 370 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 SLC26A1Q9H2B4 701 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 ADNPQ9H2P0 1102 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 ANKHQ9HCJ1 492 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 C14orf105Q9NVL8 296 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 CPSF2Q9P2I0 782 aaKnown RBP12.37□□□□□ -0.43
CLK3-224ENST00000568605 ZNF282Q9UDV7 671 aaPredicted RBP12.37□□□□□ -0.43
CLK3-224ENST00000568605 ZFP69BQ9UJL9 534 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 PTBP2Q9UKA9 531 aaKnown RBP12.37□□□□□ -0.43
CLK3-224ENST00000568605 ANGPTL3Q9Y5C1 460 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 TNPO3Q9Y5L0 923 aaKnown RBP12.37□□□□□ -0.43
CLK3-224ENST00000568605 CPAMD8Q8IZJ3 1885 aa12.37□□□□□ -0.43
CLK3-224ENST00000568605 H0YIG0 161 aa12.36□□□□□ -0.43
CLK3-224ENST00000568605 K7EPI3 171 aa12.36□□□□□ -0.43
CLK3-224ENST00000568605 SMIM24O75264 130 aa12.36□□□□□ -0.43
CLK3-224ENST00000568605 NSA2O95478 260 aaKnown RBP12.36□□□□□ -0.43
CLK3-224ENST00000568605 IGHEP01854 428 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms