RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 LRRC8EQ6NSJ5 796 aa16.19■□□□□ 0.18
CLN3-216ENST00000565316 TMEM214Q6NUQ4 689 aaKnown RBP16.19■□□□□ 0.18
CLN3-216ENST00000565316 HIBCHQ6NVY1 386 aaPredicted RBP16.19■□□□□ 0.18
CLN3-216ENST00000565316 CCDC137Q6PK04 289 aaKnown RBP16.19■□□□□ 0.18
CLN3-216ENST00000565316 AMER2Q8N7J2 671 aa16.19■□□□□ 0.18
CLN3-216ENST00000565316 MCOLN3Q8TDD5 553 aa16.19■□□□□ 0.18
CLN3-216ENST00000565316 TM4SF19Q96DZ7 209 aa16.19■□□□□ 0.18
CLN3-216ENST00000565316 MAGEB10Q96LZ2 347 aaPredicted RBP16.19■□□□□ 0.18
CLN3-216ENST00000565316 CCDC138Q96M89 665 aa16.19■□□□□ 0.18
CLN3-216ENST00000565316 CYTH2Q99418 400 aa16.19■□□□□ 0.18
CLN3-216ENST00000565316 FAM167BQ9BTA0 163 aa16.19■□□□□ 0.18
CLN3-216ENST00000565316 ADAMTS6Q9UKP5 1117 aa16.19■□□□□ 0.18
CLN3-216ENST00000565316 MAD1L1Q9Y6D9 718 aa16.19■□□□□ 0.18
CLN3-216ENST00000565316 CSMD1Q96PZ7 3565 aa16.19■□□□□ 0.18
CLN3-216ENST00000565316 ZG16O60844 167 aa16.19■□□□□ 0.18
CLN3-216ENST00000565316 PTK6Q13882 451 aa16.19■□□□□ 0.18
CLN3-216ENST00000565316 C1QL3Q5VWW1 255 aa16.19■□□□□ 0.18
CLN3-216ENST00000565316 PRSS41Q7RTY9 318 aa16.19■□□□□ 0.18
CLN3-216ENST00000565316 CPEB2Q7Z5Q1 589 aaKnown RBP16.19■□□□□ 0.18
CLN3-216ENST00000565316 PCGF5Q86SE9 256 aa16.19■□□□□ 0.18
CLN3-216ENST00000565316 SHISA5Q8N114 240 aa16.19■□□□□ 0.18
CLN3-216ENST00000565316 C2CD4AQ8NCU7 369 aaPredicted RBP16.19■□□□□ 0.18
CLN3-216ENST00000565316 DNAJB8Q8NHS0 232 aa16.19■□□□□ 0.18
CLN3-216ENST00000565316 METTL21AQ8WXB1 218 aa16.19■□□□□ 0.18
CLN3-216ENST00000565316 NAP1L3Q99457 506 aaPredicted RBP16.19■□□□□ 0.18
CLN3-216ENST00000565316 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.19■□□□□ 0.18
CLN3-216ENST00000565316 PARVBQ9HBI1 364 aa16.19■□□□□ 0.18
CLN3-216ENST00000565316 ABI3Q9P2A4 366 aa16.19■□□□□ 0.18
CLN3-216ENST00000565316 TRMT6Q9UJA5 497 aaKnown RBP16.19■□□□□ 0.18
CLN3-216ENST00000565316 ENTPD4Q9Y227 616 aa16.19■□□□□ 0.18
CLN3-216ENST00000565316 PDE10AQ9Y233 779 aa16.19■□□□□ 0.18
CLN3-216ENST00000565316 OR5H15A6NDH6 313 aa16.18■□□□□ 0.18
CLN3-216ENST00000565316 SLC16A5O15375 505 aa16.18■□□□□ 0.18
CLN3-216ENST00000565316 PRAMEF2O60811 474 aa16.18■□□□□ 0.18
CLN3-216ENST00000565316 F10P00742 488 aa16.18■□□□□ 0.18
CLN3-216ENST00000565316 STATHP02808 62 aa16.18■□□□□ 0.18
CLN3-216ENST00000565316 C8GP07360 202 aa16.18■□□□□ 0.18
CLN3-216ENST00000565316 BCL6P41182 706 aa16.18■□□□□ 0.18
CLN3-216ENST00000565316 KCNK10P57789 538 aa16.18■□□□□ 0.18
CLN3-216ENST00000565316 SP140Q13342 867 aa16.18■□□□□ 0.18
CLN3-216ENST00000565316 ABHD17BQ5VST6 288 aa16.18■□□□□ 0.18
CLN3-216ENST00000565316 PLAG1Q6DJT9 500 aa16.18■□□□□ 0.18
CLN3-216ENST00000565316 UGT3A1Q6NUS8 523 aa16.18■□□□□ 0.18
CLN3-216ENST00000565316 H3F3CQ6NXT2 135 aa16.18■□□□□ 0.18
CLN3-216ENST00000565316 PPIL6Q8IXY8 311 aa16.18■□□□□ 0.18
CLN3-216ENST00000565316 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.18■□□□□ 0.18
CLN3-216ENST00000565316 OR51Q1Q8NH59 317 aa16.18■□□□□ 0.18
CLN3-216ENST00000565316 EEF1AKMT1Q8WVE0 214 aa16.18■□□□□ 0.18
CLN3-216ENST00000565316 MACROD1Q9BQ69 325 aa16.18■□□□□ 0.18
CLN3-216ENST00000565316 SGPP1Q9BX95 441 aa16.18■□□□□ 0.18
CLN3-216ENST00000565316 FAM129AQ9BZQ8 928 aa16.18■□□□□ 0.18
CLN3-216ENST00000565316 IARS2Q9NSE4 1012 aaKnown RBP16.18■□□□□ 0.18
CLN3-216ENST00000565316 STMN3Q9NZ72 180 aa16.18■□□□□ 0.18
CLN3-216ENST00000565316 SH2B3Q9UQQ2 575 aa16.18■□□□□ 0.18
CLN3-216ENST00000565316 CPAMD8Q8IZJ3 1885 aa16.18■□□□□ 0.18
CLN3-216ENST00000565316 PGRMC1O00264 195 aaKnown RBP16.17■□□□□ 0.18
CLN3-216ENST00000565316 CRYABP02511 175 aaKnown RBP16.17■□□□□ 0.18
CLN3-216ENST00000565316 PGAM1P18669 254 aa16.17■□□□□ 0.18
CLN3-216ENST00000565316 GABRB3P28472 473 aa16.17■□□□□ 0.18
CLN3-216ENST00000565316 XCR1P46094 333 aa16.17■□□□□ 0.18
CLN3-216ENST00000565316 FNTAP49354 379 aa16.17■□□□□ 0.18
CLN3-216ENST00000565316 RGS4P49798 205 aa16.17■□□□□ 0.18
CLN3-216ENST00000565316 CRYMQ14894 314 aa16.17■□□□□ 0.18
CLN3-216ENST00000565316 RNASEH2BQ5TBB1 312 aaKnown RBP16.17■□□□□ 0.18
CLN3-216ENST00000565316 AGTRAPQ6RW13 159 aa16.17■□□□□ 0.18
CLN3-216ENST00000565316 LANCL3Q6ZV70 420 aa16.17■□□□□ 0.18
CLN3-216ENST00000565316 FJX1Q86VR8 437 aa16.17■□□□□ 0.18
CLN3-216ENST00000565316 C17orf64Q86WR6 236 aa16.17■□□□□ 0.18
CLN3-216ENST00000565316 PDSS2Q86YH6 399 aa16.17■□□□□ 0.18
CLN3-216ENST00000565316 CAMKVQ8NCB2 501 aa16.17■□□□□ 0.18
CLN3-216ENST00000565316 TAS2R13Q9NYV9 303 aa16.17■□□□□ 0.18
CLN3-216ENST00000565316 C19orf25Q9UFG5 118 aaPredicted RBP16.17■□□□□ 0.18
CLN3-216ENST00000565316 TEKT2Q9UIF3 430 aa16.17■□□□□ 0.18
CLN3-216ENST00000565316 SLC22A7Q9Y694 548 aa16.17■□□□□ 0.18
CLN3-216ENST00000565316 IGHV3-20A0A0C4DH32 117 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 SGK494L7N484 410 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 LCMT2O60294 686 aaKnown RBP16.16■□□□□ 0.18
CLN3-216ENST00000565316 SEC24DO94855 1032 aaPredicted RBP16.16■□□□□ 0.18
CLN3-216ENST00000565316 RASAL1O95294 804 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 UQCRHP07919 91 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 MYBL2P10244 700 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 NPPBP16860 134 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 IL1RNP18510 177 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 CCND1P24385 295 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 MST1P26927 711 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 ZNF33BQ06732 778 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 NAE1Q13564 534 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 MINDY4Q4G0A6 757 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 PAQR3Q6TCH7 311 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 LCTLQ6UWM7 567 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 GFRALQ6UXV0 394 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 MBOAT1Q6ZNC8 495 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 ANKRD37Q7Z713 158 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 ASPGQ86U10 573 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 SLC26A11Q86WA9 606 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 CNTN4Q8IWV2 1026 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 KCT2Q8NC54 265 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 ABHD11Q8NFV4 315 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 ACTRT1Q8TDG2 376 aa16.16■□□□□ 0.18
CLN3-216ENST00000565316 GRK7Q8WTQ7 553 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms