RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	SLC12A2	P55011	1212 aa		13.36	□□□□□ -0.27
TPM1-223	ENST00000560445	SRSF1	Q07955	248 aa	Known RBP eCLIP	13.36	□□□□□ -0.27	4e-10	■■■□□ 14.7
TPM1-223	ENST00000560445	RGS1	Q08116	209 aa		13.36	□□□□□ -0.27
TPM1-223	ENST00000560445	MGAT5	Q09328	741 aa		13.36	□□□□□ -0.27
TPM1-223	ENST00000560445	CALCOCO2	Q13137	446 aa		13.36	□□□□□ -0.27
TPM1-223	ENST00000560445	NAE1	Q13564	534 aa		13.36	□□□□□ -0.27
TPM1-223	ENST00000560445	VWA2	Q5GFL6	755 aa		13.36	□□□□□ -0.27
TPM1-223	ENST00000560445	MFSD4B	Q5TF39	518 aa		13.36	□□□□□ -0.27
TPM1-223	ENST00000560445	STEAP4	Q687X5	459 aa		13.36	□□□□□ -0.27
TPM1-223	ENST00000560445	RPUSD3	Q6P087	351 aa	Known RBP	13.36	□□□□□ -0.27
TPM1-223	ENST00000560445	PAQR3	Q6TCH7	311 aa		13.36	□□□□□ -0.27
TPM1-223	ENST00000560445	STRA8	Q7Z7C7	330 aa		13.36	□□□□□ -0.27
TPM1-223	ENST00000560445	AGGF1	Q8N302	714 aa	eCLIP	13.36	□□□□□ -0.27
TPM1-223	ENST00000560445	AMER3	Q8N944	861 aa		13.36	□□□□□ -0.27
TPM1-223	ENST00000560445	PRR7	Q8TB68	274 aa		13.36	□□□□□ -0.27
TPM1-223	ENST00000560445	CDKL2	Q92772	493 aa		13.36	□□□□□ -0.27
TPM1-223	ENST00000560445	FBXL8	Q96CD0	374 aa		13.36	□□□□□ -0.27
TPM1-223	ENST00000560445	PDLIM5	Q96HC4	596 aa	Known RBP	13.36	□□□□□ -0.27
TPM1-223	ENST00000560445	PSMG3-AS1	Q96PY0	264 aa		13.36	□□□□□ -0.27
TPM1-223	ENST00000560445	OR1F2P	Q96R84	312 aa		13.36	□□□□□ -0.27
TPM1-223	ENST00000560445	CLK4	Q9HAZ1	481 aa	Known RBP	13.36	□□□□□ -0.27
TPM1-223	ENST00000560445	ASF1B	Q9NVP2	202 aa		13.36	□□□□□ -0.27
TPM1-223	ENST00000560445	ABI3	Q9P2A4	366 aa		13.36	□□□□□ -0.27
TPM1-223	ENST00000560445	TXNDC16	Q9P2K2	825 aa		13.36	□□□□□ -0.27
TPM1-223	ENST00000560445	CHMP2B	Q9UQN3	213 aa		13.36	□□□□□ -0.27
TPM1-223	ENST00000560445	SLC22A7	Q9Y694	548 aa		13.36	□□□□□ -0.27
TPM1-223	ENST00000560445	DOCK10	Q96BY6	2186 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	IGHV1-45	A0A0A0MS14	117 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	BLACE	A4D250	179 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	NRP2	O60462	931 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	ALOX12B	O75342	701 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	MED26	O95402	600 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	PRR35	P0CG20	571 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	JAK1	P23458	1154 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	HPD	P32754	393 aa	Predicted RBP	13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	HNMT	P50135	292 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	CSNK1G2	P78368	415 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	MEF2A	Q02078	507 aa	Predicted RBP	13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	PWP1	Q13610	501 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	NR6A1	Q15406	480 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	EXT1	Q16394	746 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	MINDY4	Q4G0A6	757 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	PRR30	Q53SZ7	412 aa	Predicted RBP	13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	TEDDM1	Q5T9Z0	273 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	HECTD2	Q5U5R9	776 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	ABHD17B	Q5VST6	288 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	TMEM214	Q6NUQ4	689 aa	Known RBP	13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	HIBCH	Q6NVY1	386 aa	Predicted RBP	13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	ABHD13	Q7L211	337 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	MAATS1	Q7Z4T9	603 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	ADAMTSL2	Q86TH1	951 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	CUZD1	Q86UP6	607 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	ZC3H7A	Q8IWR0	971 aa	Known RBP	13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	BCORP1	Q8N888	145 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	ST6GALNAC3	Q8NDV1	305 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	ABHD11	Q8NFV4	315 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	SLC13A3	Q8WWT9	602 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	ALKBH8	Q96BT7	664 aa	Known RBP	13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	TSPAN17	Q96FV3	270 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	PDLIM2	Q96JY6	352 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	C5orf34	Q96MH7	638 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	RNF32	Q9H0A6	362 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	ZNF700	Q9H0M5	742 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	POPDC3	Q9HBV1	291 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	SLC5A6	Q9Y289	635 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	DYRK1B	Q9Y463	629 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	TEX264	Q9Y6I9	313 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	PCSK5	Q92824	1860 aa		13.35	□□□□□ -0.27
TPM1-223	ENST00000560445	TRBC2	A0A5B9	178 aa		13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	USP27X	A6NNY8	438 aa		13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	EFCAB8	A8MWE9	144 aa		13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	CDK2AP1	O14519	115 aa		13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	FOXS1	O43638	330 aa		13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	EDN3	P14138	238 aa		13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	GSTM2	P28161	218 aa		13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	BCL6	P41182	706 aa		13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	ITGA8	P53708	1063 aa		13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	CDKN2D	P55273	166 aa		13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	FOXL2	P58012	376 aa		13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	YBX1	P67809	324 aa	Known RBP	13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	CSHL1	Q14406	222 aa		13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	TMEM205	Q6UW68	189 aa		13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	LINC00696	Q6ZRV3	163 aa		13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	FRA10AC1	Q70Z53	315 aa		13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	CREG2	Q8IUH2	290 aa		13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	ARHGEF39	Q8N4T4	335 aa		13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	MFSD9	Q8NBP5	474 aa		13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	OR9A4	Q8NGU2	314 aa		13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	OR56A3	Q8NH54	315 aa		13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	BARD1	Q99728	777 aa	Known RBP	13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	SARG	Q9BW04	601 aa		13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	ATG10	Q9H0Y0	220 aa		13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	ADAMTS6	Q9UKP5	1117 aa		13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	KCNE2	Q9Y6J6	123 aa		13.34	□□□□□ -0.27
TPM1-223	ENST00000560445	SYNDIG1L	A6NDD5	238 aa		13.33	□□□□□ -0.28
TPM1-223	ENST00000560445	P2RX6	O15547	441 aa		13.33	□□□□□ -0.28
TPM1-223	ENST00000560445	CBX6	O95503	412 aa		13.33	□□□□□ -0.28
TPM1-223	ENST00000560445	MLYCD	O95822	493 aa		13.33	□□□□□ -0.28
TPM1-223	ENST00000560445	CRYAB	P02511	175 aa	Known RBP	13.33	□□□□□ -0.28
TPM1-223	ENST00000560445	CDH1	P12830	882 aa		13.33	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms