RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 PTPN4P29074 926 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 GGT5P36269 586 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 BCL6P41182 706 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 GDF5P43026 501 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 CCR8P51685 355 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 EMP3P54852 163 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 RPS15AP62244 130 aaKnown RBP8.93□□□□□ -0.98
LDLR-211ENST00000560173 RPS18P62269 152 aaKnown RBP8.93□□□□□ -0.98
LDLR-211ENST00000560173 RPS15P62841 145 aaKnown RBP8.93□□□□□ -0.98
LDLR-211ENST00000560173 DCDP81605 110 aaKnown RBP8.93□□□□□ -0.98
LDLR-211ENST00000560173 CBX1P83916 185 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 NFKB2Q00653 900 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 MC1RQ01726 317 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 RHDQ02161 417 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 CDC20Q12834 499 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 FAM83EQ2M2I3 478 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 HKDC1Q2TB90 917 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 FAM214AQ32MH5 1076 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 NKAIN1Q4KMZ8 207 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 ATP1A1-AS1Q5TC04 95 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 ADGRD1Q6QNK2 874 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 ARHGEF39Q8N4T4 335 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 ENDOVQ8N8Q3 282 aaKnown RBP8.93□□□□□ -0.98
LDLR-211ENST00000560173 OR4K1Q8NGD4 311 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 RHEBL1Q8TAI7 183 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 UBTD2Q8WUN7 234 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 TTC9Q92623 222 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 EXT2Q93063 718 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 RERGQ96A58 199 aaPredicted RBP8.93□□□□□ -0.98
LDLR-211ENST00000560173 THAP11Q96EK4 314 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 TSNARE1Q96NA8 513 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 ZIM3Q96PE6 472 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 C17orf62Q9BQA9 187 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 TMEM109Q9BVC6 243 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 SARGQ9BW04 601 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 NLNQ9BYT8 704 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 VPS11Q9H270 941 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 CNOT10Q9H9A5 744 aaKnown RBP8.93□□□□□ -0.98
LDLR-211ENST00000560173 PELI2Q9HAT8 420 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 SLC22A11Q9NSA0 550 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 WWOXQ9NZC7 414 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 NUDT4Q9NZJ9 180 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 CD274Q9NZQ7 290 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 FETUBQ9UGM5 382 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 PTBP2Q9UKA9 531 aaKnown RBP8.93□□□□□ -0.98
LDLR-211ENST00000560173 PLAAQ9Y263 795 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 RUVBL1Q9Y265 456 aaKnown RBP8.93□□□□□ -0.98
LDLR-211ENST00000560173 SLC22A14Q9Y267 594 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 FARSAQ9Y285 508 aaKnown RBP8.93□□□□□ -0.98
LDLR-211ENST00000560173 DYRK1BQ9Y463 629 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 KCNE2Q9Y6J6 123 aa8.93□□□□□ -0.98
LDLR-211ENST00000560173 MDC1Q14676 2089 aaKnown RBP8.93□□□□□ -0.98
LDLR-211ENST00000560173 TRBC2A0A5B9 178 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 FEZF1A0PJY2 475 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 SUPT3HB4E1H0 165 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 UBXN8O00124 270 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 TXNDC9O14530 226 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 CNOT3O75175 753 aaKnown RBP8.92□□□□□ -0.98
LDLR-211ENST00000560173 SUPT3HO75486 399 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 STK16O75716 305 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 WDR47O94967 919 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 RECKO95980 971 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 STATHP02808 62 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 S100BP04271 92 aaPredicted RBP8.92□□□□□ -0.98
LDLR-211ENST00000560173 ITGB2P05107 769 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 SNRPAP09012 282 aaKnown RBP8.92□□□□□ -0.98
LDLR-211ENST00000560173 PRKAR1AP10644 381 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 MTHFD2P13995 350 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 ALAS2P22557 587 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 GRK3P35626 688 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 GLRBP48167 497 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 HSPA7P48741 367 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 REEP5Q00765 189 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 MEF2AQ02078 507 aaPredicted RBP8.92□□□□□ -0.98
LDLR-211ENST00000560173 CDC16Q13042 620 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 IL10RAQ13651 578 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 SLC9A5Q14940 896 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 ACAP2Q15057 778 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 MUM1Q2TAK8 710 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 FBXO48Q5FWF7 155 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 CATSPEREQ5SY80 951 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 AGBL2Q5U5Z8 902 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 FAM69BQ5VUD6 431 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 GARNL3Q5VVW2 1013 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 MRPL14Q6P1L8 145 aaKnown RBP8.92□□□□□ -0.98
LDLR-211ENST00000560173 KLC3Q6P597 504 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 NXPE4Q6UWF7 544 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 TIFABQ6ZNK6 161 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 SLCO4C1Q6ZQN7 724 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 COX15Q7KZN9 410 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 TMPRSS11BQ86T26 416 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 SYVN1Q86TM6 617 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 PLD6Q8N2A8 252 aaKnown RBP8.92□□□□□ -0.98
LDLR-211ENST00000560173 DTWD1Q8N5C7 304 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 MFSD9Q8NBP5 474 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 LSM14AQ8ND56 463 aaKnown RBP8.92□□□□□ -0.98
LDLR-211ENST00000560173 ZNF740Q8NDX6 193 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 FAM76AQ8TAV0 307 aa8.92□□□□□ -0.98
LDLR-211ENST00000560173 ZDHHC19Q8WVZ1 309 aaPredicted RBP8.92□□□□□ -0.98
LDLR-211ENST00000560173 FKBP10Q96AY3 582 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms