RNA–Protein interactions for RNA: ENST00000558155.1

SPG11-208, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-208ENST00000558155 CCDC71Q8IV32 467 aaPredicted RBP4.88□□□□□ -1.63
SPG11-208ENST00000558155 VRK3Q8IV63 474 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 CCDC50Q8IVM0 306 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 ZC3H7AQ8IWR0 971 aaKnown RBP4.88□□□□□ -1.63
SPG11-208ENST00000558155 MARVELD2Q8N4S9 558 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 CPSF7Q8N684 471 aaKnown RBP4.88□□□□□ -1.63
SPG11-208ENST00000558155 LRRN4CLQ8ND94 238 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 PLPP5Q8NEB5 264 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 OR10Q1Q8NGQ4 319 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 OR2A1Q8NGT9 310 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 OR51Q1Q8NH59 317 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 HMGCLL1Q8TB92 370 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 NUDT8Q8WV74 236 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 SKA2Q8WVK7 121 aaPredicted RBP4.88□□□□□ -1.63
SPG11-208ENST00000558155 HAUS1Q96CS2 278 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 LPAR4Q99677 370 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 MDFIQ99750 246 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 BPIFA3Q9BQP9 254 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 GORASP1Q9BQQ3 440 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 PLCD4Q9BRC7 762 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 DPH7Q9BTV6 452 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 SARGQ9BW04 601 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 PACSIN1Q9BY11 444 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 VN1R1Q9GZP7 353 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 DRC3Q9H069 523 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 CLEC4MQ9H2X3 399 aaPredicted RBP4.88□□□□□ -1.63
SPG11-208ENST00000558155 LIME1Q9H400 295 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 MRPS30Q9NP92 439 aaKnown RBP4.88□□□□□ -1.63
SPG11-208ENST00000558155 RASSF1Q9NS23 344 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 ZNF358Q9NW07 568 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 ANAPC5Q9UJX4 755 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 TTC7AQ9ULT0 858 aaPredicted RBP4.88□□□□□ -1.63
SPG11-208ENST00000558155 NENFQ9UMX5 172 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 KLF13Q9Y2Y9 288 aaPredicted RBP4.88□□□□□ -1.63
SPG11-208ENST00000558155 SBDSQ9Y3A5 250 aaKnown RBP eCLIP4.88□□□□□ -1.63
SPG11-208ENST00000558155 HRH3Q9Y5N1 445 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 SCN3AQ9NY46 2000 aa4.88□□□□□ -1.63
SPG11-208ENST00000558155 DNAJC13O75165 2243 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 hCG_1818297A0A087WSY0 165 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 CCDC162PA2VCL2 907 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 ZNF839A8K0R7 811 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 APOC4-APOC2K7ER74 178 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 PSTPIP1O43586 416 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 AKR1B10O60218 316 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 HS6ST1O60243 411 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 OR1I1O60431 355 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 PDE9AO76083 593 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 CCNDBP1O95273 360 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 GAS8O95995 478 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 APOC2P02655 101 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 RAF1P04049 648 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 IL10P22301 178 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 PSMA3P25788 255 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 CTNNA2P26232 953 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 AOAHP28039 575 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 PSMB5P28074 263 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 FOXN2P32314 431 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 PTGER1P34995 402 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 RPA3P35244 121 aaPredicted RBP4.87□□□□□ -1.63
SPG11-208ENST00000558155 HSD17B2P37059 387 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 ST13P50502 369 aaKnown RBP4.87□□□□□ -1.63
SPG11-208ENST00000558155 HLCSP50747 726 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 WDR4P57081 412 aaKnown RBP4.87□□□□□ -1.63
SPG11-208ENST00000558155 NUP107P57740 925 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 MAT1AQ00266 395 aaKnown RBP4.87□□□□□ -1.63
SPG11-208ENST00000558155 MEF2AQ02078 507 aaPredicted RBP4.87□□□□□ -1.63
SPG11-208ENST00000558155 TYRO3Q06418 890 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 PRDX1Q06830 199 aaKnown RBP4.87□□□□□ -1.63
SPG11-208ENST00000558155 KEAP1Q14145 624 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 POU6F1Q14863 301 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 NSDHLQ15738 373 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 PARP6Q2NL67 630 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 HKDC1Q2TB90 917 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 DEFB113Q30KQ7 82 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 GXYLT1Q4G148 440 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 ANKRD20A4Q4UJ75 823 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 FASTKD1Q53R41 847 aaKnown RBP4.87□□□□□ -1.63
SPG11-208ENST00000558155 SFT2D3Q587I9 215 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 TMEM198Q66K66 360 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 PAPD4Q6PIY7 484 aaKnown RBP4.87□□□□□ -1.63
SPG11-208ENST00000558155 LANCL3Q6ZV70 420 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 PCGF5Q86SE9 256 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 CDC20BQ86Y33 519 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 CDKL3Q8IVW4 592 aaPredicted RBP4.87□□□□□ -1.63
SPG11-208ENST00000558155 SULF2Q8IWU5 870 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 ZZZ3Q8IYH5 903 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 TMEM151AQ8N4L1 468 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 AMER2Q8N7J2 671 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 OR5M3Q8NGP4 307 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 C16orf52Q8NHV5 167 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 SMPDL3AQ92484 453 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 LRRC46Q96FV0 321 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 SEC16BQ96JE7 1060 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 SPATA13Q96N96 652 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 PANX3Q96QZ0 392 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 OR2A5Q96R48 311 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 NPAS2Q99743 824 aa4.87□□□□□ -1.63
SPG11-208ENST00000558155 EBNA1BP2Q99848 306 aaKnown RBP4.87□□□□□ -1.63
SPG11-208ENST00000558155 GPATCH1Q9BRR8 931 aaKnown RBP4.87□□□□□ -1.63
SPG11-208ENST00000558155 ACAT2Q9BWD1 397 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms