RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 SDC1P18827 310 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 HRH2P25021 359 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 CA5AP35218 305 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 DEPDC1Q5TB30 811 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 RAB42Q8N4Z0 105 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 C7orf57Q8NEG2 295 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 NFKBIDQ8NI38 313 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 TMEM121BQ9BXQ6 578 aaPredicted RBP14.37□□□□□ -0.11
CUX1-215ENST00000556210 TAC3Q9UHF0 121 aa14.37□□□□□ -0.11
CUX1-215ENST00000556210 IFNA8P32881 189 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 SSR2P43308 183 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 C17orf64Q86WR6 236 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 POF1BQ8WVV4 589 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 MACROD1Q9BQ69 325 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 TRMT61BQ9BVS5 477 aaKnown RBP14.36□□□□□ -0.11
CUX1-215ENST00000556210 ELAC1Q9H777 363 aaKnown RBP14.36□□□□□ -0.11
CUX1-215ENST00000556210 RBBP6Q7Z6E9 1792 aaKnown RBP14.36□□□□□ -0.11
CUX1-215ENST00000556210 KRBA1A5PL33 1030 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 ISM1B1AKI9 464 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 PSMD11O00231 422 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 SGTAO43765 313 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 C8orf89P0DMQ9 161 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 ACP5P13686 325 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 GGT1P19440 569 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 MAPK12P53778 367 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 GPAT3Q53EU6 434 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 PTCHD4Q6ZW05 846 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 SLC34A3Q8N130 599 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 FLCNQ8NFG4 579 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 COPS4Q9BT78 406 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 LHCGRP22888 699 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 HOXD12P35452 270 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 RUNX1T1Q06455 604 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 ELMSAN1Q6PJG2 1045 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 CASP12Q6UXS9 341 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 TUBA1CQ9BQE3 449 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 NUAK2Q9H093 628 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 FBXW2Q9UKT8 454 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 MED16Q9Y2X0 877 aa14.36□□□□□ -0.11
CUX1-215ENST00000556210 LAMA2P24043 3122 aaKnown RBP14.35□□□□□ -0.11
CUX1-215ENST00000556210 HTR3EA5X5Y0 456 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 HIDE1A8MVS5 230 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 TAF4O00268 1085 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 SLC35G4P0C7Q5 338 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 DCKP27707 260 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 GRK3P35626 688 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 PYCR3Q53H96 274 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 CYBRD1Q53TN4 286 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 EIF3MQ7L2H7 374 aaKnown RBP14.35□□□□□ -0.11
CUX1-215ENST00000556210 CCDC177Q9NQR7 707 aaPredicted RBP14.35□□□□□ -0.11
CUX1-215ENST00000556210 LYVE1Q9Y5Y7 322 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 BACE2Q9Y5Z0 518 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 FAM220BPB1ANY3 271 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 H7BY64 318 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 BCAS1O75363 584 aaPredicted RBP14.35□□□□□ -0.11
CUX1-215ENST00000556210 TSPAN12O95859 305 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 CD36P16671 472 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 KDELR2P33947 212 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 DCTP40126 519 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 TUBA3CQ13748 450 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 RFX4Q33E94 735 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 SPANXN2Q5MJ10 180 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 NEK5Q6P3R8 708 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 TRIM40Q6P9F5 258 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 RNF130Q86XS8 419 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 ZNF683Q8IZ20 524 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 HUS1BQ8NHY5 278 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 OR8D1Q8WZ84 308 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 ART5Q96L15 291 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 PRAP1Q96NZ9 151 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 YIPF2Q9BWQ6 316 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.35□□□□□ -0.11
CUX1-215ENST00000556210 AHSPQ9NZD4 102 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 INTS6Q9UL03 887 aaKnown RBP14.35□□□□□ -0.11
CUX1-215ENST00000556210 H0YAE9 185 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 CAPN15O75808 1086 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 PAK4O96013 591 aaPredicted RBP14.35□□□□□ -0.11
CUX1-215ENST00000556210 CLTBP09497 229 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 CR2P20023 1033 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 PIGAP37287 484 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 SRSF11Q05519 484 aaKnown RBP14.35□□□□□ -0.11
CUX1-215ENST00000556210 ABHD18Q0P651 414 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 IRF5Q13568 498 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 DUOXA1Q1HG43 343 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 CNKSR3Q6P9H4 555 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 OR10G6Q8NH81 332 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 ZNF385DQ9H6B1 395 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 IL36AQ9UHA7 158 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 ABCG2Q9UNQ0 655 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 KCNK6Q9Y257 313 aa14.35□□□□□ -0.11
CUX1-215ENST00000556210 A0A1W2PRB8 838 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 FGBP02675 491 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 S100A1P23297 94 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 RPS7P62081 194 aaKnown RBP14.34□□□□□ -0.11
CUX1-215ENST00000556210 RAB33AQ14088 237 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 NFE2L1Q14494 772 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 ZSWIM9Q86XI8 627 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 FAM129CQ86XR2 697 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 AMER2Q8N7J2 671 aa14.34□□□□□ -0.11
CUX1-215ENST00000556210 SPHK2Q9NRA0 654 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms